Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 2.3e-96 355.5 174 100.0
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.8e-94 348.6 171 99.4
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.4e-92 341.7 171 97.1
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 9.9e-92 340.1 171 96.5
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.9e-92 340.1 171 96.5
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.3e-91 339.7 171 96.5
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-91 339.3 171 96.5
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.8e-91 338.2 171 95.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 6.4e-91 337.4 171 95.9
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 6.4e-91 337.4 171 94.2
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 8.4e-91 337.0 171 95.3
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.1e-90 336.7 171 95.3
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.1e-90 336.7 171 95.9
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.4e-90 336.3 171 95.3
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.9e-90 335.9 171 94.2
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.9e-90 335.9 172 93.6
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.2e-90 335.1 171 94.7
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.2e-90 334.7 171 94.7
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 5.4e-90 334.3 171 94.7
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 7.1e-90 334.0 171 94.2
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 7.1e-90 334.0 171 95.3
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 7.1e-90 334.0 170 94.7
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 7.1e-90 334.0 170 94.7
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 9.3e-90 333.6 169 95.9
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 9.3e-90 333.6 171 94.2
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.2e-89 333.2 171 94.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.2e-89 333.2 171 92.4
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.2e-89 333.2 171 93.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.2e-89 333.2 171 93.0
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.6e-89 332.8 171 94.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 93.6
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 94.2
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 93.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 93.6
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 93.6
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.1e-89 332.4 171 93.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.5e-89 331.6 171 94.7
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.5e-89 331.6 169 94.7
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 4.6e-89 331.3 171 93.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 6.0e-89 330.9 171 94.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.0e-89 330.9 170 94.1
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 6.0e-89 330.9 182 90.1
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 7.9e-89 330.5 171 93.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.0e-88 330.1 171 94.7
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.0e-88 330.1 171 93.6
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.0e-88 330.1 171 93.6
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.0e-88 330.1 171 93.6
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 1.0e-88 330.1 171 92.4
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.3e-88 329.7 169 93.5
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.3e-88 329.7 171 92.4
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 92.4
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 92.4
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 92.4
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 92.4
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 93.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-88 329.3 171 93.0
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.3e-88 328.9 171 93.0
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.3e-88 328.9 171 93.6
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 2.3e-88 328.9 171 93.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.3e-88 328.9 171 93.6
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.0e-88 328.6 171 91.8
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 3.0e-88 328.6 171 93.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.0e-88 328.6 171 92.4
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 3.9e-88 328.2 171 93.6
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.9e-88 328.2 168 93.5
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 5.1e-88 327.8 171 91.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 5.1e-88 327.8 171 92.4
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 5.1e-88 327.8 171 92.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 5.1e-88 327.8 171 91.8
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 5.1e-88 327.8 171 90.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.7e-88 327.4 171 93.6
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 8.7e-88 327.0 171 91.8
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.1e-87 326.6 171 91.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.1e-87 326.6 169 92.9
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.1e-87 326.6 171 91.8
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.5e-87 326.2 171 91.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.9e-87 325.9 171 92.4
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.5e-87 325.5 169 91.7
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.3e-87 325.1 171 93.0
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 3.3e-87 325.1 182 88.5
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 4.3e-87 324.7 171 93.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 4.3e-87 324.7 169 93.5
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.3e-87 324.7 171 91.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 5.6e-87 324.3 171 90.6
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 7.4e-87 323.9 171 91.2
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 7.4e-87 323.9 171 91.2
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 9.6e-87 323.6 171 91.8
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 9.6e-87 323.6 169 92.9
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 9.6e-87 323.6 171 91.2
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.3e-86 323.2 169 92.9
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.3e-86 323.2 168 91.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.1e-86 322.4 171 91.2
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 2.1e-86 322.4 171 91.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.1e-86 322.4 167 94.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 4.8e-86 321.2 171 90.6
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 4.8e-86 321.2 171 90.6
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.8e-86 321.2 171 91.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.8e-86 321.2 169 91.1
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.1e-85 318.5 171 90.1
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 4.2e-82 308.1 171 87.7
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 5.5e-82 307.8 177 86.4
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 4.6e-81 304.7 235 68.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 3.0e-80 302.0 169 86.4
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.5e-79 299.7 169 83.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.5e-79 298.9 169 84.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 4.8e-78 294.7 162 86.4
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.2e-76 290.0 144 98.6
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.8e-72 276.2 143 94.4
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 5.7e-71 271.2 147 89.8
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.3e-70 267.7 169 75.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 6.3e-70 267.7 156 85.3
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.8e-69 266.2 155 85.8
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.5e-68 263.1 155 85.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.6e-68 260.8 144 89.6
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.5e-67 257.7 144 86.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.5e-66 254.6 144 87.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.6e-65 253.1 170 72.4
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 4.6e-65 251.5 148 85.1
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.9e-64 248.4 138 90.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.3e-61 238.0 181 69.6
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 4.8e-54 214.9 141 77.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-49 199.9 144 72.2
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.6e-44 182.6 161 57.1
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.4e-40 170.2 167 57.5
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 9.7e-39 164.1 83 95.2
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 8.0e-33 144.4 76 93.4
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.3e-32 142.9 69 97.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 3.4e-31 139.0 73 87.7
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.3e-30 134.8 67 97.0
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.3e-27 127.1 109 62.4
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 2.1e-25 119.8 93 64.5
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 4.3e-18 95.5 52 86.5
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.0e-16 89.0 46 84.8


User provided reference genes

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