Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 9.3e-83 310.1 148 100.0
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.2e-74 283.1 149 94.0
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-65 253.1 148 85.8
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 3.0e-65 251.9 148 85.1
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.4e-64 247.3 148 83.8
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.3e-63 246.5 158 78.5
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.2e-63 245.7 148 83.1
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-63 245.7 148 83.1
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.2e-63 245.7 148 81.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 2.2e-63 245.7 157 78.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 2.2e-63 245.7 157 78.3
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.8e-63 245.4 158 78.5
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.7e-63 245.0 148 83.1
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 4.8e-63 244.6 158 78.5
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 6.3e-63 244.2 148 82.4
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 6.3e-63 244.2 148 81.8
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 6.3e-63 244.2 148 82.4
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 6.3e-63 244.2 148 82.4
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 8.2e-63 243.8 148 81.8
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.1e-62 243.4 148 81.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.1e-62 243.4 148 81.8
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.1e-62 243.4 148 82.4
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.4e-62 242.3 148 81.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 2.4e-62 242.3 146 82.9
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.1e-62 241.9 158 77.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.1e-62 241.9 148 81.1
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.1e-62 241.9 148 80.4
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.1e-62 241.9 148 80.4
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.1e-62 241.9 159 76.7
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.1e-62 241.5 148 81.1
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.1e-62 241.5 148 81.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 4.1e-62 241.5 148 81.1
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 5.3e-62 241.1 158 77.2
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 5.3e-62 241.1 158 76.6
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 7.0e-62 240.7 148 81.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 7.0e-62 240.7 148 81.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 7.0e-62 240.7 148 81.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 9.1e-62 240.4 148 80.4
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 9.1e-62 240.4 158 76.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 9.1e-62 240.4 158 77.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 9.1e-62 240.4 148 79.7
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 9.1e-62 240.4 146 81.5
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.2e-61 240.0 148 81.1
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.2e-61 240.0 148 80.4
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.6e-61 239.6 158 75.9
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.6e-61 239.6 148 80.4
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.0e-61 239.2 158 75.3
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.0e-61 239.2 148 80.4
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.0e-61 239.2 158 75.9
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.6e-61 238.8 146 80.1
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.6e-61 238.8 148 79.7
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 3.5e-61 238.4 158 75.3
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.5e-61 238.4 148 80.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.5e-61 238.4 148 81.1
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 80.4
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 79.7
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 79.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.5e-61 238.0 158 75.3
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 80.4
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 80.4
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 79.1
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 4.5e-61 238.0 148 79.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 5.9e-61 237.7 148 80.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 5.9e-61 237.7 146 80.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 5.9e-61 237.7 147 80.3
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 5.9e-61 237.7 148 80.4
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 7.7e-61 237.3 148 79.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 7.7e-61 237.3 148 79.1
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 7.7e-61 237.3 148 79.1
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 7.7e-61 237.3 148 79.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 7.7e-61 237.3 146 80.8
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.7e-61 237.3 148 80.4
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 7.7e-61 237.3 158 76.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 1.0e-60 236.9 158 76.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.3e-60 236.5 148 80.4
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.3e-60 236.5 148 79.7
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.3e-60 236.5 145 80.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.7e-60 236.1 146 79.5
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.2e-60 235.7 148 78.4
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.2e-60 235.7 148 79.7
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.2e-60 235.7 146 80.1
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 2.9e-60 235.3 148 79.1
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 3.8e-60 235.0 148 79.7
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 3.8e-60 235.0 158 74.7
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 3.8e-60 235.0 148 78.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 5.0e-60 234.6 148 76.4
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 6.5e-60 234.2 148 79.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 8.5e-60 233.8 158 74.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 8.5e-60 233.8 158 74.7
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 8.5e-60 233.8 158 75.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 8.5e-60 233.8 148 79.1
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.5e-59 233.0 156 75.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.9e-59 232.6 158 74.1
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-59 232.6 154 76.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.9e-59 232.6 145 79.3
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 2.5e-59 232.3 148 78.4
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 3.2e-59 231.9 148 77.7
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.2e-59 231.9 148 77.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 5.5e-59 231.1 142 79.6
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 7.2e-59 230.7 148 78.4
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.2e-58 229.9 148 77.7
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.0e-57 226.9 147 77.6
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 2.0e-56 222.6 148 75.7
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 7.5e-56 220.7 154 74.7
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.7e-55 219.5 146 74.0
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.2e-55 219.2 153 74.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 6.3e-55 217.6 153 74.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 8.2e-55 217.2 146 72.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 8.2e-55 217.2 146 71.2
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 4.5e-53 211.5 212 56.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 7.7e-53 210.7 139 74.8
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 5.5e-51 204.5 125 82.4
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 9.8e-48 193.7 121 81.0
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 2.4e-46 189.1 150 64.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.7e-45 185.7 120 78.3
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 5.9e-45 184.5 147 62.6
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.8e-44 181.8 121 76.0
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-41 173.7 121 71.9
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.2e-41 171.4 121 72.7
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.6e-40 169.1 86 94.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.9e-37 157.9 85 87.1
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-30 136.7 105 67.6
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 4.3e-27 125.2 167 46.7
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 6.2e-26 121.3 148 43.9
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.8e-25 119.8 60 95.0
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.2e-18 97.1 76 68.4
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.6e-18 95.5 46 95.7
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 6.2e-18 94.7 50 86.0
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 3.1e-17 92.4 87 56.3
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.6e-16 89.4 80 61.2
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 9.9e-16 87.4 96 51.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.9e-15 85.9 46 82.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 6.4e-07 58.2 28 92.9


User provided reference genes

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