Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 4.0e-34 147.5 74 100.0
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 3.8e-32 141.0 74 94.6
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 8.4e-32 139.8 74 93.2
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 1.6e-30 135.6 70 95.7
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 1.8e-26 122.1 74 81.1
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 5.8e-25 117.1 72 80.6
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.1e-18 96.3 74 63.5
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 4.5e-17 90.9 70 61.4
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.6e-17 90.1 70 64.3
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.3e-16 89.4 70 62.9
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.7e-16 89.0 74 59.5
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.9e-16 88.2 73 61.6
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.8e-16 87.8 74 59.5
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.8e-16 87.8 73 61.6
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 3.8e-16 87.8 73 61.6
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 4.2e-15 84.3 70 60.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 9.3e-15 83.2 70 58.6
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.7e-14 81.6 71 59.2
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.3e-13 79.3 66 57.6
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-13 78.6 76 56.6
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.9e-13 77.8 71 53.5
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.7e-13 76.6 76 55.3
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.9e-12 75.5 73 52.1
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 4.3e-12 74.3 74 52.7
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 5.6e-12 73.9 78 55.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.4e-12 73.6 76 52.6
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.1e-11 72.0 73 50.7
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 3.7e-11 71.2 47 66.0
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 1.8e-10 68.9 70 55.7
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 1.8e-10 68.9 67 50.7
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 2.4e-10 68.6 75 53.3
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 6.9e-10 67.0 70 52.9
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 9.0e-10 66.6 46 69.6
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.2e-09 66.2 78 47.4
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.2e-09 66.2 70 48.6
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.2e-09 66.2 70 52.9
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 2.0e-09 65.5 73 50.7
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 3.4e-09 64.7 77 50.6
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.5e-09 64.3 75 48.0
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 7.6e-09 63.5 74 48.6
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 1.3e-08 62.8 77 50.6
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 2.9e-08 61.6 73 47.9
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 2.9e-08 61.6 73 47.9
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 2.9e-08 61.6 75 46.7
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.4e-08 60.1 72 45.8
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 8.4e-08 60.1 67 47.8
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.1e-07 59.7 68 47.1
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.1e-07 59.7 68 47.1
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.1e-07 59.7 68 47.1
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 1.1e-07 59.7 72 50.0
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 1.1e-07 59.7 66 51.5
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.1e-07 59.7 68 48.5
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 1.1e-07 59.7 74 45.9
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.5e-07 58.5 75 44.0
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 2.5e-07 58.5 72 45.8
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 3.2e-07 58.2 75 44.0
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 3.2e-07 58.2 74 43.2
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 4.2e-07 57.8 67 43.3
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.2e-07 57.8 76 44.7
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 4.2e-07 57.8 61 50.8
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.2e-07 57.8 71 46.5
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.5e-07 57.4 75 42.7
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.5e-07 57.4 75 42.7
Phvul.001G027000 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 5.5e-07 57.4 70 51.4
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 7.1e-07 57.0 68 47.1
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 9.3e-07 56.6 72 47.2
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 1.2e-06 56.2 72 47.2
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 1.2e-06 56.2 72 45.8
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 1.6e-06 55.8 75 44.0
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 1.6e-06 55.8 69 44.9
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.6e-06 55.8 71 45.1
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.1e-06 55.5 72 41.7
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 2.1e-06 55.5 75 42.7
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.7e-06 55.1 72 41.7
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 2.7e-06 55.1 68 45.6
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.7e-06 55.1 72 45.8
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 2.7e-06 55.1 56 46.4
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 3.5e-06 54.7 70 47.1
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 4.6e-06 54.3 73 41.1
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 4.6e-06 54.3 72 45.8
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 6.0e-06 53.9 75 42.7
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.9e-06 53.5 76 46.1
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 7.9e-06 53.5 76 46.1


User provided reference genes

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