Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 2.0e-264 915.2 458 100.0
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.0e-229 797.3 458 90.2
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 2.3e-228 795.4 451 90.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.7e-220 769.2 465 85.4
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 6.4e-215 750.7 467 83.9
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 2.3e-212 742.3 383 96.6
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 6.9e-201 704.1 464 79.5
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 9.3e-198 693.7 463 77.8
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.0e-196 690.3 454 77.5
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.1e-195 686.8 456 76.5
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.9e-195 686.0 454 77.1
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 5.6e-195 684.5 460 76.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 8.1e-194 680.6 462 75.8
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.8e-193 679.5 400 85.0
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.4e-193 679.1 494 75.7
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.0e-192 676.0 447 75.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 2.6e-192 675.6 447 77.9
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.3e-191 673.3 462 74.9
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.9e-191 672.2 443 77.2
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.4e-190 669.8 427 79.4
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 5.5e-190 667.9 444 77.7
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 2.7e-189 665.6 458 76.0
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.9e-189 664.1 455 75.4
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.0e-188 662.1 394 82.5
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 8.7e-188 660.6 400 81.8
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.1e-187 660.2 461 75.1
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 2.5e-187 659.1 455 75.2
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.3e-187 658.7 401 81.5
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 9.6e-187 657.1 401 81.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.6e-186 656.4 442 76.0
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 3.7e-186 655.2 419 79.2
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.7e-186 655.2 386 83.4
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.1e-185 653.7 401 81.0
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 2.4e-185 652.5 430 77.2
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.4e-184 648.7 467 73.2
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.0e-183 647.1 488 70.5
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 5.0e-183 644.8 417 77.9
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 6.5e-183 644.4 496 68.5
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 8.5e-183 644.0 386 82.1
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 3.2e-182 642.1 459 73.6
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.1e-181 639.4 491 72.3
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.0e-180 635.6 442 74.2
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 6.7e-180 634.4 455 74.3
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.5e-179 632.5 406 78.3
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 2.6e-176 622.5 380 82.1
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.0e-175 620.5 374 81.3
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.0e-175 620.5 413 75.5
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.4e-174 616.7 412 74.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.2e-174 615.1 432 73.8
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 5.5e-174 614.8 435 73.1
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 7.2e-174 614.4 437 72.8
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 7.2e-174 614.4 437 71.4
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.6e-173 613.2 424 73.8
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.6e-173 613.2 442 71.5
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 3.6e-173 612.1 444 71.2
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.6e-173 612.1 419 73.7
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.1e-173 611.3 452 75.2
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 6.1e-173 611.3 408 76.5
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.8e-172 609.8 588 58.8
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 6.7e-172 607.8 438 71.7
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 8.8e-172 607.4 393 77.1
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.3e-171 605.5 482 66.2
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-170 603.6 386 77.7
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.7e-170 603.2 519 62.6
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 4.8e-170 601.7 465 68.4
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 3.1e-169 599.0 460 68.9
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.0e-168 596.3 413 73.1
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 3.2e-166 589.0 452 69.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 9.4e-166 587.4 473 67.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.7e-165 585.9 441 69.8
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 3.6e-165 585.5 445 70.6
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.0e-164 583.9 381 78.0
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.4e-164 583.6 354 81.9
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.0e-163 579.7 404 74.0
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.4e-163 577.8 443 68.6
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-154 550.1 391 71.6
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.8e-153 546.6 415 69.9
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.6e-152 543.5 346 80.1
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.6e-152 543.5 443 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 6.5e-151 538.1 445 63.1
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.6e-149 532.3 460 61.5
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 9.1e-145 517.7 424 65.8
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.2e-144 517.3 416 64.7
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.1e-142 510.8 358 74.0
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 3.2e-142 509.2 440 64.5
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 7.2e-142 508.1 405 66.7
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.6e-141 506.9 383 65.3
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 4.7e-141 505.4 399 65.7
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.0e-131 473.4 298 79.5
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 9.8e-123 444.5 398 62.1
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.4e-121 439.9 348 69.3
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.1e-118 431.0 404 55.0
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 8.1e-117 424.9 297 76.4
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 4.4e-115 419.1 261 81.2
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.4e-113 413.3 274 76.3
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 8.1e-109 398.3 396 53.5
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 3.4e-107 392.9 486 47.9
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 1.5e-91 340.9 252 74.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 3.2e-89 333.2 203 76.8
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.1e-88 330.5 539 41.2
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.0e-84 315.1 249 70.7
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.2e-83 314.7 247 71.3
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 3.0e-79 300.1 244 69.3
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.6e-78 295.8 185 76.2
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.1e-77 293.9 185 74.6
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.6e-75 287.0 184 79.9
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 2.2e-74 283.9 375 49.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.3e-71 274.6 193 70.5
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.4e-67 260.0 169 79.9
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 5.5e-65 252.7 155 80.6
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.7e-64 250.4 203 68.0
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 1.5e-62 244.6 194 70.1
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.4e-60 238.0 139 83.5
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.1e-60 236.9 164 75.0
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 3.8e-58 229.9 251 56.2
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 3.8e-58 229.9 251 56.2
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 3.8e-58 229.9 251 56.2
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 9.4e-57 225.3 162 67.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 1.1e-54 218.4 255 55.7
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 8.2e-53 212.2 137 75.2
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 3.8e-50 203.4 126 79.4
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 4.5e-43 179.9 148 68.2
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.5e-42 176.0 129 70.5
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 3.3e-38 163.7 144 57.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 5.9e-35 152.9 150 60.7
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 1.1e-33 148.7 92 78.3
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 5.2e-31 139.8 78 89.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.1e-28 130.6 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 7.7e-27 125.9 121 59.5
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 3.8e-26 123.6 82 76.8
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 7.2e-25 119.4 101 65.3
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 6.8e-23 112.8 62 87.1
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.3e-21 108.6 86 61.6
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 8.3e-21 105.9 169 39.6
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.0e-18 99.0 175 40.0
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.1e-17 95.5 158 44.3
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 9.5e-17 92.4 58 77.6
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.2e-11 75.5 73 50.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.8e-07 61.6 132 33.3
RcHm_v2.0_Chr6g0290121 Rosa chinensis HOM05D005057 ORTHO05D346767 3.1e-07 60.8 33 87.9


User provided reference genes

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