Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.2e-69 266.5 150 100.0
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.0e-65 251.5 151 94.7
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 8.9e-65 250.4 151 94.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 8.9e-65 250.4 151 94.0
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.9e-63 244.6 151 92.7
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 9.6e-51 203.8 158 77.8
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-48 195.3 155 77.4
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 6.2e-42 174.5 141 75.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.4e-41 172.6 153 70.6
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.4e-41 172.6 153 71.2
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.1e-41 172.2 153 70.6
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 4.0e-41 171.8 157 69.4
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.6e-40 169.1 163 66.3
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 3.4e-40 168.7 156 66.0
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 9.9e-40 167.2 146 71.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-39 166.8 156 70.5
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 1.7e-39 166.4 159 69.2
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.9e-39 165.6 153 68.0
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.9e-39 164.9 154 69.5
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.4e-39 164.1 157 68.2
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.4e-39 164.1 153 69.9
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 8.4e-39 164.1 154 68.8
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.1e-38 163.7 159 68.6
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.4e-38 163.3 159 67.9
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 7.1e-38 161.0 135 71.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 9.3e-38 160.6 133 72.2
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.6e-37 159.8 153 68.6
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.1e-37 159.5 159 66.7
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-37 159.1 155 69.7
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.5e-37 158.7 136 69.9
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.5e-37 158.7 136 69.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 3.5e-37 158.7 108 83.3
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 6.0e-37 157.9 151 70.9
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 6.0e-37 157.9 156 67.9
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.0e-36 157.1 153 68.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-36 156.8 147 69.4
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.8e-36 156.4 137 69.3
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 2.3e-36 156.0 158 66.5
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 2.3e-36 156.0 158 66.5
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 8.7e-36 154.1 163 65.6
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.1e-35 153.7 158 67.1
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.1e-35 153.7 154 64.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.3e-35 152.1 157 63.7
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 4.3e-35 151.8 135 71.9
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 5.6e-35 151.4 159 64.8
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 5.6e-35 151.4 147 67.3
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 7.4e-35 151.0 148 65.5
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 3.7e-34 148.7 147 66.0
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 8.1e-34 147.5 158 62.0
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 1.1e-33 147.1 149 66.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.8e-33 146.4 139 68.3
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 4.0e-33 145.2 131 69.5
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 4.0e-33 145.2 147 65.3
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 9.0e-33 144.1 123 74.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 1.5e-32 143.3 166 60.8
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 3.4e-32 142.1 141 66.0
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 5.8e-32 141.4 147 61.9
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.1e-30 137.1 150 60.0
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.1e-30 137.1 195 53.3
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.4e-30 136.7 153 61.4
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.4e-30 136.7 148 60.8
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 5.5e-30 134.8 155 60.6
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 2.1e-29 132.9 126 69.0
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 2.1e-29 132.9 156 59.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 2.7e-29 132.5 152 59.9
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.7e-29 132.5 159 59.1
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.0e-29 131.3 159 58.5
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 6.0e-29 131.3 145 60.7
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 7.9e-29 131.0 137 63.5
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 1.8e-28 129.8 137 61.3
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.3e-28 129.4 152 57.9
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 3.0e-28 129.0 137 64.2
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.0e-28 129.0 157 57.3
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 3.9e-28 128.6 137 62.8
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 3.9e-28 128.6 160 58.1
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 5.1e-28 128.3 136 64.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 6.7e-28 127.9 131 65.6
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.1e-27 127.1 156 57.1
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.1e-27 127.1 154 61.7
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.1e-27 127.1 158 63.3
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.5e-27 126.7 156 59.6
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.5e-27 126.7 156 59.6
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.5e-27 126.7 133 65.4
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.5e-27 126.7 147 61.9
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.5e-27 126.7 156 57.7
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.9e-27 126.3 158 57.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.9e-27 126.3 137 62.8
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.9e-27 126.3 158 57.0
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.9e-27 126.3 148 56.8
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.9e-27 126.3 157 56.7
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.5e-27 125.9 138 62.3
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.3e-27 125.2 159 56.0
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 4.3e-27 125.2 137 62.8
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 5.6e-27 124.8 159 56.6
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 7.4e-27 124.4 149 56.4
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 9.6e-27 124.0 152 60.5
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.3e-26 123.6 138 62.3
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.3e-26 123.6 138 62.3
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.3e-26 123.6 138 62.3
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 2.8e-26 122.5 79 82.3
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 8.2e-26 120.9 153 54.2
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.4e-25 119.4 160 55.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 4.0e-25 118.6 86 77.9
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 4.0e-25 118.6 97 72.2
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 6.9e-25 117.9 109 68.8
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 9.0e-25 117.5 142 59.9
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 9.0e-25 117.5 116 64.7
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 6.5e-23 111.3 149 55.7
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 6.5e-23 111.3 149 55.7
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 6.5e-23 111.3 89 73.0
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.2e-22 109.0 138 56.5
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 3.2e-22 109.0 163 49.7
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 5.5e-22 108.2 108 64.8
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 4.6e-21 105.1 164 48.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 6.0e-21 104.8 75 76.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 7.9e-21 104.4 158 49.4
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.8e-20 103.2 76 77.6
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 6.7e-20 101.3 63 85.7
FAN25G0298 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.5e-19 99.4 66 89.4
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 3.3e-19 99.0 152 50.0
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 4.8e-18 95.1 121 56.2
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.6e-13 80.1 118 51.7
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.4e-12 77.0 59 74.6
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 2.3e-12 76.3 131 49.6
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.9e-12 75.5 138 45.7
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 5.1e-12 75.1 119 47.1
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.5e-11 72.8 86 58.1
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.7e-10 70.1 116 50.0
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.9e-07 59.3 46 71.7


User provided reference genes

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