Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 4.3e-141 504.6 248 100.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.1e-125 453.4 248 91.9
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-125 453.4 248 91.9
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-125 453.4 248 91.9
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.2e-124 447.2 248 91.1
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-123 445.3 248 90.7
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-123 445.3 248 90.7
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.7e-117 423.7 295 75.9
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 4.5e-114 414.8 249 81.1
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 4.2e-112 408.3 248 81.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.3e-100 370.2 247 73.3
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 8.3e-100 367.5 244 73.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 9.1e-99 364.0 252 71.8
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-98 363.6 247 72.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.0e-98 362.8 250 72.8
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 5.9e-98 361.3 246 74.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.3e-97 359.4 246 71.5
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.6e-95 352.1 247 70.4
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 8.0e-95 350.9 245 71.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.0e-94 350.5 243 68.3
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.8e-94 349.7 246 67.5
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.8e-94 349.7 227 70.9
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 3.0e-94 349.0 222 73.9
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 5.2e-94 348.2 248 69.8
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 6.8e-94 347.8 244 69.7
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-93 346.7 244 68.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.0e-93 346.3 242 69.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 2.0e-93 346.3 245 69.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 2.6e-93 345.9 226 73.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.4e-93 345.5 244 68.9
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-93 345.1 287 68.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 5.7e-93 344.7 244 68.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 7.5e-93 344.4 250 68.8
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.2e-92 342.8 245 69.8
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.7e-92 342.0 222 72.1
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 6.3e-92 341.3 247 66.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 6.3e-92 341.3 202 76.7
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 6.3e-92 341.3 208 75.5
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.1e-91 340.5 256 67.2
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.1e-91 340.5 249 67.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.1e-91 340.5 249 67.1
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-91 339.7 246 66.7
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.8e-91 339.7 244 68.9
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.4e-91 339.3 235 70.2
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 3.1e-91 339.0 243 66.7
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 3.1e-91 339.0 214 74.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 3.1e-91 339.0 242 68.2
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.1e-91 338.6 240 69.2
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 9.2e-91 337.4 243 66.3
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 9.2e-91 337.4 243 66.3
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.6e-90 336.7 241 68.9
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.6e-90 336.7 244 66.4
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.5e-90 335.5 209 74.2
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 4.5e-90 335.1 240 68.3
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 4.5e-90 335.1 245 69.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 7.8e-90 334.3 249 65.1
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.0e-89 334.0 246 67.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.0e-89 334.0 219 70.3
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.3e-89 333.6 251 65.3
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.7e-89 333.2 245 66.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.7e-89 333.2 245 66.9
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.7e-89 333.2 247 68.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.7e-89 333.2 239 67.8
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.7e-89 333.2 246 65.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 2.9e-89 332.4 245 63.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.9e-89 332.4 205 74.1
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 3.8e-89 332.0 244 66.0
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.8e-89 332.0 246 65.4
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 5.0e-89 331.6 251 63.7
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.0e-89 331.6 247 66.8
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 8.6e-89 330.9 249 63.9
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 8.6e-89 330.9 249 65.1
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 8.6e-89 330.9 213 73.2
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 248 65.7
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.1e-88 330.5 240 67.1
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.5e-88 330.1 257 63.8
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-88 329.7 251 64.5
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.9e-88 329.7 203 73.9
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.9e-88 329.7 239 66.9
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.9e-88 329.7 248 65.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-88 329.3 245 65.7
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 4.3e-88 328.6 249 64.3
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 5.6e-88 328.2 246 65.4
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 9.5e-88 327.4 203 73.4
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.1e-87 326.2 241 67.2
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 2.8e-87 325.9 247 65.6
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 3.6e-87 325.5 251 64.5
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 8.0e-87 324.3 199 74.4
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.8e-86 323.2 201 75.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 3.1e-86 322.4 248 64.5
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 4.0e-86 322.0 248 63.7
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 4.0e-86 322.0 241 63.9
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 6.8e-86 321.2 234 67.9
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 6.8e-86 321.2 242 62.8
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.8e-86 321.2 255 63.5
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.0e-85 319.7 194 75.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.0e-85 319.7 245 64.9
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.4e-85 318.9 248 62.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 2.4e-83 312.8 251 61.4
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.2e-83 312.4 261 62.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.1e-83 312.0 237 65.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.2e-82 310.5 246 60.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 3.3e-80 302.4 172 81.4
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.7e-76 290.0 201 67.7
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.7e-76 290.0 304 50.0
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 8.3e-76 287.7 241 61.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.1e-75 285.4 249 60.2
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.8e-69 265.0 148 82.4
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.6e-66 255.4 224 56.7
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.1e-64 250.8 136 85.3
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.1e-64 250.8 316 46.5
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.4e-61 238.8 219 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.6e-58 230.3 189 55.6
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-57 227.3 248 50.4
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.5e-56 223.8 147 75.5
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 4.3e-56 222.2 203 52.2
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.2e-52 209.9 183 50.3
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 6.4e-52 208.4 145 64.8
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 9.3e-51 204.5 119 80.7
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.1e-46 189.5 190 44.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.6e-45 186.4 154 56.5
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.9e-43 180.3 106 79.2
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.2e-42 177.6 208 44.7
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.7e-42 176.4 169 51.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.1e-40 171.0 100 78.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 81.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.4e-38 164.1 97 79.4
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 6.9e-38 161.8 146 56.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-37 160.6 100 76.0
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.8e-31 139.8 142 52.1
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.4e-30 137.5 87 75.9
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 5.8e-29 132.1 84 66.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-27 127.1 183 43.2
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 3.2e-27 126.3 80 72.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 6.1e-26 122.1 100 56.0
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.3e-23 114.4 198 31.8
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 8.2e-23 111.7 93 60.2
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.4e-22 110.2 89 59.6
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.4e-22 110.2 89 59.6
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.3e-22 109.0 69 71.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 6.9e-22 108.6 72 69.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 6.9e-22 108.6 72 69.4
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.6e-21 106.7 71 69.0
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 3.4e-21 106.3 102 57.8
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 6.7e-17 92.0 182 30.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.8e-14 84.0 80 55.0
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 7.7e-13 78.6 117 29.9
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 2.2e-12 77.0 100 42.0
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 4.2e-11 72.8 44 72.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 4.2e-11 72.8 44 72.7
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 5.5e-11 72.4 45 71.1
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.6e-10 69.7 120 36.7
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 2.3e-09 67.0 40 77.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.9e-09 66.2 61 45.9
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-08 64.3 56 53.6
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.0e-08 63.9 55 56.4
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.4e-08 62.8 40 70.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.7e-07 59.7 35 74.3
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.7e-07 59.7 35 74.3
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 7.0e-06 55.5 45 51.1


User provided reference genes

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