Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0009581 Rosa chinensis HOM05D010466 ORTHO05D013607 2.7e-161 572.0 301 100.0
RcHm_v2.0_Chr6g0292381 Rosa chinensis HOM05D000034 ORTHO05D000037 1.9e-37 160.6 94 88.3
RcHm_v2.0_Chr4g0414051 Rosa chinensis HOM05D000034 ORTHO05D000037 9.2e-37 158.3 94 87.2
RcHm_v2.0_Chr4g0406001 Rosa chinensis HOM05D010466 ORTHO05D013607 2.7e-36 156.8 88 93.2
RcHm_v2.0_Chr7g0231491 Rosa chinensis HOM05D010466 ORTHO05D013607 2.4e-32 143.7 88 87.5
FAN14G4281 Fragaria x ananassa HOM05D000020 ORTHO05D013607 1.1e-21 108.2 96 63.5
FAN09G2538 Fragaria x ananassa HOM05D000441 ORTHO05D013607 7.1e-21 105.5 84 67.9
FAN28G0617 Fragaria x ananassa HOM05D002834 ORTHO05D003029 7.1e-21 105.5 89 62.9
FvH4_4g20922 Fragaria vesca HOM05D000034 ORTHO05D000037 6.0e-20 102.4 94 61.7
FvH4_5g23912 Fragaria vesca HOM05D000034 ORTHO05D000037 7.9e-20 102.1 94 61.7
FvH4_7g19211 Fragaria vesca HOM05D000034 ORTHO05D000037 1.8e-19 100.9 94 60.6
FAN15G2037 Fragaria x ananassa HOM05D010466 ORTHO05D013607 1.8e-19 100.9 84 66.7
FAN22G0927 Fragaria x ananassa HOM05D004779 ORTHO05D013607 2.0e-15 87.4 80 62.5
FAN26G1759 Fragaria x ananassa HOM05D010466 ORTHO05D014273 9.9e-15 85.1 74 64.9
RcHm_v2.0_Chr4g0406011 Rosa chinensis HOM05D000876 ORTHO05D000285 1.7e-14 84.3 42 83.3
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.2e-14 84.0 85 55.3
FvH4_4g07761 Fragaria vesca HOM05D000876 ORTHO05D000285 2.2e-14 84.0 162 34.6
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 4.9e-14 82.8 88 53.4
RcHm_v2.0_Chr3g0459461 Rosa chinensis HOM05D000876 ORTHO05D000285 6.4e-14 82.4 49 67.3
Atru.chr3.2332 Acer truncatum HOM05D000034 ORTHO05D000037 1.1e-13 81.6 88 55.7
FvH4_3g29911 Fragaria vesca HOM05D000034 ORTHO05D000037 1.9e-13 80.9 88 53.4
Atru.chr10.2194 Acer truncatum HOM05D000034 ORTHO05D000037 4.2e-13 79.7 92 53.3
Atru.chr7.1288 Acer truncatum HOM05D000034 ORTHO05D014273 5.5e-13 79.3 87 54.0
RcHm_v2.0_Chr2g0145511 Rosa chinensis HOM05D010466 ORTHO05D013607 5.5e-13 79.3 53 84.9
RcHm_v2.0_Chr2g0162641 Rosa chinensis HOM05D010466 ORTHO05D000037 5.5e-13 79.3 52 86.5
CANSAT25G1749 Cannabis sativa HOM05D000034 ORTHO05D000037 7.1e-13 79.0 85 49.4
FvH4_2g13361 Fragaria vesca HOM05D000034 ORTHO05D000037 7.1e-13 79.0 88 51.1
FAN23G1446 Fragaria x ananassa HOM05D021770 ORTHO05D009451 7.1e-13 79.0 128 43.0
CANSAT56G4166 Cannabis sativa HOM05D000034 ORTHO05D000037 1.2e-12 78.2 85 49.4
CANSAT25G0317 Cannabis sativa HOM05D000034 ORTHO05D000037 2.1e-12 77.4 85 48.2
arahy.Tifrunner.gnm1.ann1.Y4Z60F Arachis hypogaea HOM05D000034 ORTHO05D000037 4.6e-12 76.3 96 44.8
CANSAT11G0430 Cannabis sativa HOM05D000034 ORTHO05D000037 7.9e-12 75.5 85 48.2
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 1.0e-11 75.1 96 43.8
Atru.chr11.924 Acer truncatum HOM05D000034 ORTHO05D000285 1.3e-11 74.7 94 42.6
arahy.Tifrunner.gnm1.ann1.TEB0R7 Arachis hypogaea HOM05D000034 ORTHO05D000037 3.9e-11 73.2 96 43.8
FvH4_5g30881 Fragaria vesca HOM05D009570 ORTHO05D009451 3.9e-11 73.2 83 53.0
arahy.Tifrunner.gnm1.ann1.JE1DTX Arachis hypogaea HOM05D000034 ORTHO05D000037 5.1e-11 72.8 96 42.7
FAN03G1391 Fragaria x ananassa HOM05D000876 ORTHO05D014273 5.1e-11 72.8 155 32.3
FvH4_2g04530 Fragaria vesca HOM05D000034 ORTHO05D000037 1.1e-10 71.6 85 49.4
FvH4_2g11121 Fragaria vesca HOM05D000034 ORTHO05D000037 1.1e-10 71.6 85 49.4
FAN02G4243 Fragaria x ananassa HOM05D010466 ORTHO05D013607 1.1e-10 71.6 67 58.2
FAN18G3926 Fragaria x ananassa HOM05D010466 ORTHO05D013607 1.1e-10 71.6 67 58.2
FAN21G2291 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-10 71.2 39 71.8
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 1.9e-10 70.9 52 57.7
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-10 70.9 37 75.7
FAN14G5115 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-10 70.9 37 75.7
FAN28G0183 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-10 70.9 51 58.8
RcHm_v2.0_Chr7g0199291 Rosa chinensis HOM05D000034 ORTHO05D000037 1.9e-10 70.9 89 46.1
arahy.Tifrunner.gnm1.ann1.UAQH0I Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-10 70.5 96 42.7
FAN23G2933 Fragaria x ananassa HOM05D010466 ORTHO05D013607 2.5e-10 70.5 63 61.9
FAN27G3450 Fragaria x ananassa HOM05D010466 ORTHO05D013607 3.3e-10 70.1 67 56.7
arahy.Tifrunner.gnm1.ann1.WA83K8 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.3e-10 69.7 96 41.7
FAN04G1353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.6e-10 69.3 42 64.3
Hma1.2p1_1123F.1_g259380 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 5.6e-10 69.3 111 37.8
arahy.Tifrunner.gnm1.ann1.JL1WEN Arachis hypogaea HOM05D000034 ORTHO05D000037 7.4e-10 68.9 96 41.7
FAN05G2607 Fragaria x ananassa HOM05D021770 ORTHO05D013607 7.4e-10 68.9 68 61.8
FAN09G0655 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.4e-10 68.9 37 73.0
FAN09G1076 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.6e-10 68.6 58 55.2
FAN15G2299 Fragaria x ananassa HOM05D010466 ORTHO05D013607 9.6e-10 68.6 63 60.3
FAN23G3103 Fragaria x ananassa HOM05D010466 ORTHO05D013607 9.6e-10 68.6 63 60.3
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-09 68.2 58 55.2
FAN09G0662 Fragaria x ananassa HOM05D010466 ORTHO05D013607 1.3e-09 68.2 64 59.4
FAN27G0018 Fragaria x ananassa HOM05D021770 ORTHO05D009451 1.3e-09 68.2 128 38.3
FvH4_4g20923 Fragaria vesca HOM05D000876 ORTHO05D000285 1.6e-09 67.8 38 68.4
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 1.6e-09 67.8 38 68.4
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 2.1e-09 67.4 42 61.9
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.1e-09 67.4 42 61.9
FvH4_6g53026 Fragaria vesca HOM05D000034 ORTHO05D014273 2.8e-09 67.0 80 47.5
Hma1.2p1_0455F.1_g156310 Hydrangea macrophylla HOM05D001457 ORTHO05D016634 2.8e-09 67.0 94 41.5
Hma1.2p1_1747F.1_g300600 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.8e-09 67.0 94 41.5
FvH4_2g22190 Fragaria vesca HOM05D000077 ORTHO05D000552 3.7e-09 66.6 66 62.1
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.8e-09 66.2 44 54.5
FAN12G2727 Fragaria x ananassa HOM05D000034 ORTHO05D014273 6.2e-09 65.9 81 45.7
RcHm_v2.0_Chr2g0162801 Rosa chinensis HOM05D010466 ORTHO05D344535 1.4e-08 64.7 138 36.2
Hma1.2p1_0344F.1_g131050 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.8e-08 64.3 94 38.3
Hma1.2p1_0344F.1_g131060 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.8e-08 64.3 94 38.3
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-08 63.9 57 54.4
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-08 63.9 42 61.9
FAN12G1859 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-08 63.9 42 59.5
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.1e-08 63.5 38 63.2
FAN26G1613 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.1e-08 63.5 38 65.8
MD11G1151600 Malus domestica HOM05D000034 ORTHO05D000037 3.1e-08 63.5 65 50.8
Hund18223 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.2e-07 61.6 50 50.0
Hund23629 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.2e-07 61.6 50 50.0
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 1.5e-07 61.2 80 45.0
PSO357G0155 Papaver somniferum HOM05D000034 ORTHO05D000037 1.5e-07 61.2 86 39.5
Hund16990 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.5e-07 61.2 50 50.0
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.5e-07 61.2 50 50.0
RcHm_v2.0_Chr7g0242041 Rosa chinensis HOM05D010466 ORTHO05D000037 3.4e-07 60.1 33 90.9
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 5.8e-07 59.3 63 38.1
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 5.8e-07 59.3 63 38.1
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 5.8e-07 59.3 58 51.7
FAN28G0660 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.8e-07 59.3 38 60.5
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 7.6e-07 58.9 38 55.3
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.3e-06 58.2 57 43.9
Hma1.2p1_0148F.1_g066085 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-06 58.2 64 43.8
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.3e-06 58.2 50 48.0
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 1.7e-06 57.8 45 42.2
COL.COLO4_12989 Corchorus olitorius HOM05D000876 ORTHO05D000285 1.7e-06 57.8 75 37.3
Potri.005G163200 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.7e-06 57.8 53 43.4
FAN03G1971 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-06 57.4 27 81.5
Potri.014G026000 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.2e-06 57.4 53 43.4
COL.COLO4_03464 Corchorus olitorius HOM05D000876 ORTHO05D000285 2.9e-06 57.0 75 36.0
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 2.9e-06 57.0 42 50.0
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 2.9e-06 57.0 51 47.1
HPP92_018135 Vanilla planifolia HOM05D000876 ORTHO05D000285 2.9e-06 57.0 51 41.2
Potri.004G097601 Populus trichocarpa HOM05D000876 ORTHO05D000285 3.8e-06 56.6 53 43.4
RcHm_v2.0_Chr5g0069971 Rosa chinensis HOM05D000876 ORTHO05D000285 3.8e-06 56.6 51 47.1
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 3.8e-06 56.6 55 43.6
COL.COLO4_19726 Corchorus olitorius HOM05D000876 ORTHO05D000285 4.9e-06 56.2 75 36.0
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 45 48.9
Potri.001G402200 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 53 41.5
Potri.003G006700 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 53 41.5
Potri.010G132850 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 53 41.5
Potri.011G094000 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 53 41.5
Potri.015G012100 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-06 56.2 53 41.5
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 45 48.9
Potri.003G192350 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 55 40.0
Potri.004G230401 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 55 40.0
Potri.005G135800 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 55 40.0
Potri.010G019001 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 55 40.0
Potri.018G075600 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 53 41.5
Potri.019G061000 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.5e-06 55.8 55 40.0
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 8.4e-06 55.5 43 44.2
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 8.4e-06 55.5 43 44.2
Potri.006G116400 Populus trichocarpa HOM05D000876 ORTHO05D000285 8.4e-06 55.5 53 43.4
RcHm_v2.0_Chr2g0153151 Rosa chinensis HOM05D000876 ORTHO05D000285 8.4e-06 55.5 45 48.9


User provided reference genes

Program Settings