Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 4.3e-159 564.7 299 100.0
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 2.7e-129 465.7 302 82.5
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 4.0e-125 451.8 293 81.6
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 9.0e-125 450.7 312 78.8
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.9e-122 443.0 298 80.2
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 3.8e-83 312.4 282 62.4
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 5.5e-74 282.0 232 67.7
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 3.7e-70 269.2 284 55.6
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 1.0e-64 251.1 245 56.7
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 6.3e-62 241.9 278 50.0
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 6.3e-62 241.9 284 47.9
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 6.3e-62 241.9 283 49.8
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.4e-61 240.7 262 53.1
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.2e-60 237.7 287 47.4
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 3.5e-60 236.1 279 50.2
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 4.5e-60 235.7 279 50.5
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 6.5e-59 231.9 252 53.2
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 8.5e-59 231.5 272 51.8
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 8.5e-59 231.5 219 57.5
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 1.9e-58 230.3 269 48.0
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 9.4e-58 228.0 280 48.6
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.6e-57 226.1 293 46.1
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.8e-56 223.8 266 51.5
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 6.8e-56 221.9 276 51.1
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 6.8e-56 221.9 286 46.2
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 3.4e-55 219.5 270 48.9
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 3.4e-55 219.5 288 44.8
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 7.5e-55 218.4 270 48.5
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 9.8e-55 218.0 260 46.9
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 1.3e-54 217.6 250 50.4
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.7e-54 217.2 256 45.7
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 2.8e-54 216.5 228 53.5
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 3.1e-53 213.0 273 47.6
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 2.0e-52 210.3 280 44.6
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 1.5e-50 204.1 281 42.0
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 1.9e-50 203.8 252 48.4
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 3.3e-50 203.0 283 44.9
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 7.2e-50 201.8 270 44.8
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.2e-49 201.1 286 42.0
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.6e-49 200.7 271 42.8
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.1e-49 200.3 295 38.3
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 6.1e-49 198.7 257 41.6
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 6.1e-49 198.7 257 41.6
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 5.7e-47 192.2 286 42.0
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.1e-45 186.4 249 44.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 3.1e-45 186.4 273 43.6
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 4.5e-44 182.6 290 41.4
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 6.6e-43 178.7 214 46.3
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 3.3e-42 176.4 255 41.2
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 3.3e-42 176.4 178 55.1
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.6e-41 174.1 237 46.0
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 6.1e-41 172.2 182 51.6
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 1.5e-39 167.5 282 37.9
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.0e-39 167.2 192 45.8
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 5.8e-39 165.6 177 52.5
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 5.8e-39 165.6 246 41.1
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 6.4e-38 162.2 189 46.0
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 1.1e-37 161.4 279 38.0
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 1.4e-37 161.0 280 37.5
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 5.4e-37 159.1 271 37.6
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.6e-36 157.5 267 39.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.6e-36 157.5 259 37.5
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.3e-35 154.5 276 35.1
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.0e-35 153.3 277 37.9
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 3.9e-35 152.9 279 34.8
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 2.5e-34 150.2 240 40.0
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 5.6e-34 149.1 280 34.6
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 9.5e-34 148.3 283 35.3
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 9.5e-34 148.3 275 37.5
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 9.5e-34 148.3 262 36.6
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 3.6e-33 146.4 262 35.9
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 1.8e-32 144.1 246 35.4
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.2e-31 141.4 284 34.5
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.6e-31 140.2 188 45.2
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 2.6e-31 140.2 156 48.7
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.8e-31 139.0 207 40.6
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 2.9e-30 136.7 257 35.0
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 8.3e-30 135.2 252 34.1
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 1.4e-29 134.4 220 38.6
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.4e-29 133.7 207 39.1
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.4e-29 133.7 207 39.1
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 5.4e-29 132.5 163 44.8
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 1.2e-28 131.3 276 36.2
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 7.8e-28 128.6 226 37.2
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 2.3e-27 127.1 242 36.0
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 3.0e-27 126.7 216 36.6
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 8.6e-27 125.2 214 36.4
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.5e-26 123.6 252 29.4
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.1e-24 118.2 288 30.2
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 1.8e-24 117.5 254 32.3
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 2.9e-22 110.2 251 31.5
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 5.1e-19 99.4 173 36.4
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 1.6e-17 94.4 335 24.2
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.5e-15 87.8 113 44.2
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.6e-15 85.5 71 60.6
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.6e-15 85.5 71 60.6
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-14 84.3 70 60.0
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 3.2e-13 80.1 86 44.2
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 5.4e-13 79.3 215 29.8
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 5.6e-10 69.3 317 22.7
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 8.1e-09 65.5 84 42.9
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 1.4e-08 64.7 135 33.3
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.6e-07 60.5 207 24.6
Prupe.1G318200 Prunus persica HOM05D007447 ORTHO05D009372 8.4e-06 55.5 123 39.0


User provided reference genes

Program Settings