Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0008901 Rosa chinensis HOM05D005633 ORTHO05D007003 5.1e-179 630.9 315 100.0
FvH4_3g08860 Fragaria vesca HOM05D005633 ORTHO05D007003 7.6e-159 563.9 310 91.6
FAN11G1234 Fragaria x ananassa HOM05D005633 ORTHO05D007003 3.8e-158 561.6 310 91.3
FAN21G3099 Fragaria x ananassa HOM05D005633 ORTHO05D007003 4.2e-157 558.1 310 90.6
FAN25G1993 Fragaria x ananassa HOM05D005633 ORTHO05D007003 3.6e-156 555.1 310 90.0
FAN16G2481 Fragaria x ananassa HOM05D005633 ORTHO05D007003 2.6e-143 512.3 310 84.5
Prupe.4G050600 Prunus persica HOM05D005633 ORTHO05D007003 4.7e-140 501.5 313 80.2
MD10G1291600 Malus domestica HOM05D005633 ORTHO05D007003 3.7e-129 465.3 322 75.2
Cfa000508 Carpinus fangiana HOM05D005633 ORTHO05D007003 7.5e-122 441.0 314 71.3
Haze_06405 Corylus avellana HOM05D005633 ORTHO05D007003 1.7e-121 439.9 314 71.3
CiPaw.09G062100 Carya illinoinensis HOM05D005633 ORTHO05D007003 4.5e-119 431.8 314 69.7
QL05p041669 Quercus lobata HOM05D005633 ORTHO05D007003 2.9e-118 429.1 321 69.8
Potri.004G046900 Populus trichocarpa HOM05D005633 ORTHO05D007003 1.2e-111 407.1 326 64.7
Sabra04G0029300 Salix brachista HOM05D005633 ORTHO05D007003 2.0e-111 406.4 326 63.8
Potri.011G056100 Populus trichocarpa HOM05D005633 ORTHO05D007003 2.3e-110 402.9 326 63.5
CANSAT35G1988 Cannabis sativa HOM05D005633 ORTHO05D007003 2.5e-109 399.4 316 66.5
Thecc.06G183700 Theobroma cacao HOM05D005633 ORTHO05D007003 2.8e-108 396.0 321 62.9
TWI63G0225 Tripterygium wilfordii HOM05D005633 ORTHO05D007003 3.0e-107 392.5 316 64.2
arahy.Tifrunner.gnm1.ann1.QNV263 Arachis hypogaea HOM05D005633 ORTHO05D007003 1.5e-106 390.2 312 65.1
Atru.chr10.1822_Atru.chr10.1823 Acer truncatum HOM05D005633 ORTHO05D007003 2.6e-106 389.4 327 62.4
Atru.chr10.1839_Atru.chr10.1840 Acer truncatum HOM05D005633 ORTHO05D007003 2.6e-106 389.4 327 62.4
GSVIVG01021090001 Vitis vinifera HOM05D005633 ORTHO05D007003 1.7e-105 386.7 325 63.4
Dinv17333 Davidia involucrata HOM05D005633 ORTHO05D007003 2.2e-105 386.3 320 64.4
Gorai.010G155400 Gossypium raimondii HOM05D005633 ORTHO05D007003 6.4e-105 384.8 321 61.1
Duzib235G0140 Durio zibethinus HOM05D005633 ORTHO05D007003 1.4e-104 383.6 321 61.7
Manes.17G047800 Manihot esculenta HOM05D005633 ORTHO05D007003 4.1e-104 382.1 329 60.2
Gohir.A06G129500 Gossypium hirsutum HOM05D005633 ORTHO05D007003 9.2e-104 380.9 321 61.1
Gohir.D06G133500 Gossypium hirsutum HOM05D005633 ORTHO05D007003 9.2e-104 380.9 321 60.7
Hma1.2p1_0208F.1_g088350 Hydrangea macrophylla HOM05D005633 ORTHO05D007003 1.2e-103 380.6 326 61.3
Sabra11G0038100 Salix brachista HOM05D005633 ORTHO05D007003 1.6e-103 380.2 367 55.6
Eucgr.E03258 Eucalyptus grandis HOM05D005633 ORTHO05D007003 2.0e-103 379.8 312 62.2
Glyma.13G237200 Glycine max HOM05D005633 ORTHO05D007003 1.3e-102 377.1 313 63.6
Actinidia26133 Actinidia chinensis HOM05D005633 ORTHO05D007003 7.3e-101 371.3 315 60.6
COL.COLO4_31438 Corchorus olitorius HOM05D005633 ORTHO05D007003 1.6e-100 370.2 348 55.7
TPR.G16498 Trifolium pratense HOM05D005633 ORTHO05D007003 2.1e-100 369.8 307 63.2
Nn1g04161 Nelumbo nucifera HOM05D005633 ORTHO05D007003 1.4e-99 367.1 326 60.1
Lalb_Chr18g0059461 Lupinus albus HOM05D005633 ORTHO05D007003 1.8e-99 366.7 311 62.1
Phvul.006G183800 Phaseolus vulgaris HOM05D005633 ORTHO05D007003 1.8e-99 366.7 307 63.2
Ca_00349_v3 Cicer arietinum L. HOM05D005633 ORTHO05D007003 2.3e-99 366.3 311 61.1
Lj6g0019345 Lotus japonicus HOM05D005633 ORTHO05D007003 6.8e-99 364.8 311 62.1
Ciclev10014582m.g Citrus clementina HOM05D005633 ORTHO05D007003 1.2e-98 364.0 327 58.4
Medtr2g014210 Medicago truncatula HOM05D005633 ORTHO05D007003 9.8e-98 360.9 308 61.4
TAR629G0889 Trochodendron aralioides HOM05D005633 ORTHO05D007003 2.9e-97 359.4 329 59.9
PGR042G0490 Punica granatum HOM05D005633 ORTHO05D007003 1.1e-96 357.5 318 57.9
Psat1g203720 Pisum sativum HOM05D005633 ORTHO05D007003 1.9e-96 356.7 311 60.5
Glyma.15G076300 Glycine max HOM05D005633 ORTHO05D007003 7.0e-96 354.8 335 58.5
Sed0020009 Sechium edule HOM05D005633 ORTHO05D007003 2.0e-95 353.2 324 57.7
arahy.Tifrunner.gnm1.ann1.U0Q0B6 Arachis hypogaea HOM05D005633 ORTHO05D007003 5.0e-94 348.6 312 61.5
Rhsim02G0132600 Rhododendron simsii HOM05D005633 ORTHO05D007003 5.0e-94 348.6 321 57.6
CsaV3_6G050250 Cucumis sativus L. HOM05D005633 ORTHO05D007003 1.1e-93 347.4 326 57.7
ClCG01G023110 Citrullus lanatus HOM05D005633 ORTHO05D007003 4.3e-93 345.5 327 56.0
Lj2C290G9 Lonicera japonica HOM05D005633 ORTHO05D007003 4.3e-93 345.5 314 58.6
DCAR_004057 Daucus carota HOM05D005633 ORTHO05D007003 5.6e-93 345.1 325 56.3
THA.LOC104820553 Tarenaya hassleriana HOM05D005633 ORTHO05D007003 8.9e-91 337.8 320 55.0
PSO675G0497 Papaver somniferum HOM05D005633 ORTHO05D007003 4.4e-90 335.5 328 56.7
CARHR027810 Cardamine hirsuta HOM05D005633 ORTHO05D007003 5.8e-90 335.1 313 56.2
Sc05g0007520 Simmondsia chinensis HOM05D005633 ORTHO05D007003 1.7e-89 333.6 329 56.8
Cc02_g13630 Coffea canephora HOM05D005633 ORTHO05D007003 8.3e-89 331.3 326 53.7
Sp1g24540 Schrenkiella parvula HOM05D005633 ORTHO05D007003 5.4e-88 328.6 313 55.0
Hund21211 Selenicereus undatus HOM05D005633 ORTHO05D007003 5.4e-88 328.6 330 55.5
Oeu029366.1 Olea europaea HOM05D005633 ORTHO05D007003 9.2e-88 327.8 321 53.9
EL10Ac8g20419 Beta vulgaris HOM05D005633 ORTHO05D007003 2.7e-87 326.2 323 56.0
A09p37740 Brassica napus HOM05D005633 ORTHO05D007003 3.0e-86 322.8 309 54.7
Thhalv10006942m.g Eutrema salsugineum HOM05D005633 ORTHO05D007003 3.0e-86 322.8 312 52.6
BraA09t39286Z Brassica rapa HOM05D005633 ORTHO05D007003 3.9e-86 322.4 309 54.7
Solyc02g077900.4 Solanum lycopersicum HOM05D005633 ORTHO05D007003 6.6e-86 321.6 327 53.2
SGA_v2.0_scaffold100G29699 Striga asiatica HOM05D005633 ORTHO05D007003 6.6e-86 321.6 322 55.0
BcaB07g32448 Brassica carinata HOM05D005633 ORTHO05D007003 1.9e-85 320.1 312 53.8
ECA248G0126 Erigeron canadensis HOM05D005633 ORTHO05D007003 5.6e-85 318.5 317 52.1
Migut.M01122 Erythranthe guttata HOM05D005633 ORTHO05D007003 7.3e-85 318.2 321 54.5
Sopen02g022750 Solanum pennellii HOM05D005633 ORTHO05D007003 7.3e-85 318.2 327 52.3
Ah.14g089640 Amaranthus hybridus HOM05D005633 ORTHO05D007003 2.1e-84 316.6 319 54.9
Aqoxy1G02351 Aquilegia oxysepala HOM05D005633 ORTHO05D007003 8.1e-84 314.7 329 55.0
AT1G28320 Arabidopsis thaliana HOM05D005633 ORTHO05D007003 1.1e-83 314.3 316 54.1
HanXRQChr01g0004651 Helianthus annuus HOM05D005633 ORTHO05D007003 8.9e-83 311.2 313 54.6
PGSC0003DMG400029731 Solanum tuberosum HOM05D005633 ORTHO05D007003 8.9e-83 311.2 334 52.1
Aa31sc86G40 Aethionema arabicum HOM05D005633 ORTHO05D007003 1.5e-82 310.5 325 51.1
AL1G41900 Arabidopsis lyrata HOM05D005633 ORTHO05D007003 2.0e-82 310.1 314 52.5
CAN.G529.25 Capsicum annuum HOM05D005633 ORTHO05D007003 2.6e-82 309.7 329 50.5
Lsat_1_v5_gn_1_124421 Lactuca sativa HOM05D005633 ORTHO05D007003 3.4e-82 309.3 315 51.4
C05p27200 Brassica napus HOM05D005633 ORTHO05D007003 1.7e-81 307.0 308 52.9
Carub.0001s2677 Capsella rubella HOM05D005633 ORTHO05D007003 2.2e-81 306.6 319 51.4
MBI02_g35620_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 4.9e-81 305.4 341 51.6
BolC5t31434H Brassica oleracea HOM05D005633 ORTHO05D007003 8.4e-81 304.7 310 52.9
Nitab4.5_0016285g0010 Nicotiana tabacum HOM05D005633 ORTHO05D007003 8.4e-81 304.7 327 51.7
ATR0752G234 Amborella trichopoda HOM05D005633 ORTHO05D007003 3.0e-78 296.2 333 50.5
SalBow8G0351 Salvia bowleyana HOM05D005633 ORTHO05D007003 2.5e-77 293.1 346 49.4
VMungo0540G1564 Vigna mungo HOM05D005633 ORTHO05D007003 2.7e-71 273.1 307 52.1
AUR62014850 Chenopodium quinoa HOM05D005633 ORTHO05D007003 8.7e-70 268.1 316 49.1
Peaxi162Scf01100g00118 Petunia axillaris HOM05D005633 ORTHO05D007003 9.6e-69 264.6 293 49.8
MELO3C007272.2 Cucumis melo HOM05D005633 ORTHO05D007003 2.0e-66 256.9 272 51.5
Zm00001eb291760 Zea mays HOM05D005633 ORTHO05D007003 1.1e-64 251.1 322 42.2
SEGI_06204 Sequoiadendron giganteum HOM05D005633 ORTHO05D007003 9.3e-64 248.1 333 45.3
Cpa.g.sc373.5 Carica papaya HOM05D005633 ORTHO05D007003 1.3e-62 244.2 184 65.8
Actinidia07591 Actinidia chinensis HOM05D005633 ORTHO05D007003 5.8e-58 228.8 226 55.8
Pp3c24_9210 Physcomitrium patens HOM05D005633 ORTHO05D007003 3.8e-57 226.1 352 40.3
Nitab4.5_0002219g0050 Nicotiana tabacum HOM05D005633 ORTHO05D007003 4.9e-57 225.7 313 43.1
Os05g0497700 Oryza sativa ssp. japonica HOM05D005633 ORTHO05D007003 4.9e-57 225.7 297 45.1
AUR62017045 Chenopodium quinoa HOM05D005633 ORTHO05D007003 2.7e-55 219.9 312 42.6
Mapoly0045s0140 Marchantia polymorpha HOM05D005633 ORTHO05D007003 1.1e-53 214.5 359 41.2
HPP92_025315 Vanilla planifolia HOM05D005633 ORTHO05D007003 4.8e-52 209.1 308 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2766 Anthoceros agrestis HOM05D005633 ORTHO05D007003 1.9e-48 197.2 346 38.4
Thhalv10007180m.g Eutrema salsugineum HOM05D005633 ORTHO05D007003 5.3e-43 179.1 214 46.3
vmacro15921 Vaccinium macrocarpon HOM05D005633 ORTHO05D007003 1.8e-38 164.1 143 57.3
vmacro15920 Vaccinium macrocarpon HOM05D005633 ORTHO05D007003 1.1e-37 161.4 113 69.0
CDE11G0408 Ceratophyllum demersum HOM05D005633 ORTHO05D007003 7.4e-37 158.7 261 37.9
Cpa.g.sc373.8 Carica papaya HOM05D005633 ORTHO05D007003 1.1e-16 91.7 60 68.3
unitig_27.g24969 Utricularia gibba HOM05D005633 ORTHO05D007003 2.7e-15 87.0 337 27.0
MBI02_g35618_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 3.6e-15 86.7 106 50.0
CBR_g49781 Chara braunii HOM05D005633 ORTHO05D007003 6.7e-14 82.4 175 30.9
MBI02_g19360_MAGBIO Magnolia biondii HOM05D005633 ORTHO05D007003 1.8e-11 74.3 59 55.9
CBR_g49783 Chara braunii HOM05D005633 ORTHO05D001702 1.4e-06 58.2 60 48.3


User provided reference genes

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