Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 2.5e-57 225.3 121 100.0
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 7.0e-52 207.2 123 92.7
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 3.5e-51 204.9 123 91.9
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 5.9e-51 204.1 122 91.8
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 8.0e-48 193.7 123 89.4
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 2.0e-46 189.1 121 85.1
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 1.2e-43 179.9 121 81.8
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.9e-42 175.3 121 80.2
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 3.5e-35 151.8 112 74.1
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 7.8e-35 150.6 111 72.1
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 1.7e-34 149.4 111 70.3
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 1.7e-34 149.4 112 75.0
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 2.9e-34 148.7 111 72.1
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.1e-33 146.7 111 70.3
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 3.3e-33 145.2 100 75.0
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 4.3e-33 144.8 104 76.0
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 4.3e-33 144.8 101 74.3
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 4.3e-33 144.8 111 66.7
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 9.5e-33 143.7 112 70.5
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 1.6e-32 142.9 114 70.2
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 1.6e-32 142.9 112 71.4
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 2.1e-32 142.5 111 68.5
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 2.8e-32 142.1 112 69.6
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.8e-32 142.1 110 68.2
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 2.8e-32 142.1 111 67.6
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 2.8e-32 142.1 105 74.3
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 4.7e-32 141.4 101 74.3
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 4.7e-32 141.4 101 74.3
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.1e-32 141.0 104 74.0
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 1.0e-31 140.2 108 68.5
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.4e-31 139.8 112 66.1
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.8e-31 139.4 103 71.8
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 1.8e-31 139.4 98 74.5
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 2.3e-31 139.0 102 71.6
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 3.0e-31 138.7 101 73.3
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 3.0e-31 138.7 112 67.9
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 4.0e-31 138.3 112 65.2
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 4.0e-31 138.3 113 66.4
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 5.2e-31 137.9 103 71.8
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 1.5e-30 136.3 112 71.4
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 1.5e-30 136.3 110 68.2
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 1.5e-30 136.3 109 67.0
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 3.4e-30 135.2 101 70.3
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 4.4e-30 134.8 104 69.2
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 7.5e-30 134.0 107 66.4
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 9.8e-30 133.7 104 72.1
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.3e-29 133.3 112 62.5
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 2.2e-29 132.5 107 67.3
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 2.2e-29 132.5 109 66.1
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 2.2e-29 132.5 107 66.4
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 2.9e-29 132.1 112 65.2
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 2.9e-29 132.1 110 62.7
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.8e-28 129.4 97 71.1
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 4.1e-28 128.3 93 75.3
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 9.2e-28 127.1 111 60.4
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 9.2e-28 127.1 97 66.0
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 1.6e-27 126.3 93 73.1
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 4.6e-27 124.8 100 70.0
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 5.9e-27 124.4 95 65.3
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 5.9e-27 124.4 96 70.8
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 1.0e-26 123.6 101 61.4
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 1.0e-26 123.6 107 62.6
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 1.3e-26 123.2 103 65.0
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 1.7e-26 122.9 94 63.8
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 1.7e-26 122.9 104 65.4
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 5.0e-26 121.3 102 60.8
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 6.6e-26 120.9 99 60.6
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 8.6e-26 120.6 101 65.3
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 1.9e-25 119.4 102 59.8
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 1.9e-25 119.4 102 57.8
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 2.5e-25 119.0 110 62.7
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 2.5e-25 119.0 110 58.2
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 7.3e-25 117.5 116 61.2
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 1.2e-24 116.7 101 61.4
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 1.6e-24 116.3 103 60.2
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.6e-24 116.3 105 60.0
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 2.8e-24 115.5 84 76.2
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 3.6e-24 115.2 103 59.2
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 3.6e-24 115.2 103 59.2
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 3.6e-24 115.2 103 59.2
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 3.6e-24 115.2 81 80.2
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 6.8e-23 110.9 103 58.3
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 8.9e-23 110.5 114 52.6
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 7.5e-22 107.5 160 45.0
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 9.8e-22 107.1 128 48.4
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 9.8e-22 107.1 80 75.0
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 3.7e-21 105.1 106 51.9
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 3.7e-21 105.1 121 51.2
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 8.3e-21 104.0 100 58.0
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 1.4e-20 103.2 96 65.6
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 1.2e-19 100.1 83 65.1
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.5e-19 98.6 94 50.0
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 6.0e-19 97.8 70 72.9
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 1.0e-18 97.1 105 50.5
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 5.6e-17 91.3 64 75.0
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 7.3e-17 90.9 80 57.5
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 9.5e-17 90.5 108 45.4
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 4.7e-16 88.2 83 59.0
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 4.4e-14 81.6 91 49.5
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 8.3e-13 77.4 108 41.7
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 3.2e-12 75.5 108 42.6
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 4.6e-11 71.6 75 49.3
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.6e-08 62.0 94 40.4
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 1.1e-07 60.5 93 47.3
SEGI_39568 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 2.6e-06 55.8 54 51.9


User provided reference genes

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