Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 0.0e+00 1440.6 741 100.0
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1185.6 745 85.0
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1182.2 745 84.8
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1181.0 745 84.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1169.5 745 84.0
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 0.0e+00 1157.5 745 83.6
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.9e-264 916.0 750 66.1
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 6.6e-262 907.5 745 66.4
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.1e-251 873.6 750 64.8
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.8e-227 793.1 753 59.0
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.5e-213 746.9 753 56.7
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 7.4e-213 744.6 752 56.8
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.1e-200 704.1 756 53.6
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 5.2e-198 695.3 733 53.8
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 4.1e-195 685.6 731 54.6
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 5.0e-193 678.7 760 52.8
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 6.5e-193 678.3 761 52.4
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.5e-192 677.2 747 53.3
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 1.5e-192 677.2 763 53.1
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.1e-191 673.3 755 52.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 3.0e-190 669.5 760 53.4
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 2.2e-188 663.3 759 52.3
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 6.6e-185 651.7 755 50.9
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 8.6e-185 651.4 660 56.2
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 2.3e-182 643.3 754 49.5
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 5.2e-182 642.1 743 50.2
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-181 641.0 732 52.3
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 4.4e-181 639.0 758 49.6
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 5.7e-181 638.6 734 51.5
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.3e-180 637.5 719 51.3
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.3e-180 637.5 754 49.2
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.8e-179 633.6 733 51.0
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 5.4e-179 632.1 721 52.1
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.0e-178 630.2 723 50.6
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.7e-178 629.8 740 51.2
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 3.5e-178 629.4 743 49.5
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 2.3e-177 626.7 733 50.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 6.6e-177 625.2 745 49.5
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.6e-175 620.5 699 52.4
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 4.7e-175 619.0 717 50.3
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 9.8e-173 611.3 723 49.5
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.3e-169 600.9 720 48.9
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.3e-169 600.1 735 48.8
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 2.3e-169 600.1 725 48.7
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 3.0e-169 599.7 737 48.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.2e-159 567.8 789 45.8
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 4.0e-158 562.8 743 48.2
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 2.6e-149 533.5 747 44.6
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 5.8e-149 532.3 750 45.1
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.9e-148 529.3 750 44.5
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.2e-147 526.2 785 44.6
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.2e-147 526.2 785 44.6
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.5e-146 523.1 754 44.6
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 6.0e-146 522.3 778 44.7
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.3e-145 521.2 747 43.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.3e-145 520.4 754 44.0
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.9e-145 519.6 750 44.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 3.3e-144 516.5 751 44.1
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 2.6e-141 506.9 677 45.8
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 9.9e-141 505.0 747 43.1
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.1e-138 497.3 795 41.9
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 2.7e-138 496.9 760 43.6
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.5e-136 491.1 731 43.5
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 4.5e-133 479.6 711 43.7
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.4e-131 473.8 754 41.6
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.2e-130 471.5 842 39.9
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.3e-129 468.0 755 41.3
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.5e-128 464.5 746 42.0
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.3e-124 451.4 758 40.5
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 2.9e-124 450.3 739 41.4
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.9e-123 447.6 601 45.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 2.1e-122 444.1 550 50.9
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 8.2e-119 432.2 753 40.4
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.2e-114 418.3 751 39.4
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 5.5e-107 392.9 332 63.6
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 5.7e-104 382.9 301 67.4
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.8e-103 380.6 731 37.9
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.8e-102 377.9 735 37.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.6e-96 357.5 409 52.3
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 2.2e-87 327.8 626 38.5
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.9e-83 314.7 421 45.8
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 9.4e-83 312.4 376 51.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 9.4e-83 312.4 240 68.8
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 5.5e-75 286.6 251 57.4
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.0e-72 278.1 263 55.1
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 4.6e-53 213.8 325 41.8
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.8e-49 201.8 477 32.7
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 6.6e-44 183.3 320 40.6
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.5e-43 181.4 157 62.4
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 2.8e-42 177.9 158 60.8
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 1.5e-35 155.6 188 47.9
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 4.2e-30 137.5 98 68.4
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 3.4e-24 117.9 208 36.5
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.3e-18 99.4 156 40.4
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 1.4e-17 95.9 80 62.5
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 9.0e-17 93.2 84 51.2
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 5.5e-14 84.0 111 50.5
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 3.7e-10 71.2 77 48.1
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.4e-09 69.3 242 25.6
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.9e-07 60.8 137 31.4


User provided reference genes

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