Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 1.5e-62 242.7 120 100.0
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 5.1e-47 191.0 124 81.5
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 3.7e-45 184.9 124 79.0
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 3.7e-45 184.9 124 79.0
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 3.7e-45 184.9 124 79.0
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 3.1e-44 181.8 124 76.6
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 3.4e-43 178.3 124 77.4
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 1.7e-42 176.0 124 75.0
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 2.2e-42 175.6 124 73.4
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 5.0e-42 174.5 138 65.2
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 1.4e-41 172.9 124 72.6
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 1.9e-41 172.6 124 71.8
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 2.5e-41 172.2 127 70.1
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 2.5e-41 172.2 127 69.3
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 3.2e-41 171.8 124 73.4
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 3.2e-41 171.8 124 71.8
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 3.2e-41 171.8 124 71.8
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 4.2e-41 171.4 124 71.8
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 9.4e-41 170.2 127 69.3
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 9.4e-41 170.2 127 68.5
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 9.4e-41 170.2 127 70.1
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 9.4e-41 170.2 124 70.2
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 1.2e-40 169.9 127 69.3
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 1.6e-40 169.5 124 71.0
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 2.1e-40 169.1 127 69.3
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 2.1e-40 169.1 125 68.8
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 2.1e-40 169.1 124 71.8
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 2.7e-40 168.7 124 67.7
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 2.7e-40 168.7 124 68.5
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.7e-40 168.7 124 70.2
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 2.7e-40 168.7 124 69.4
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 2.7e-40 168.7 124 70.2
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 3.6e-40 168.3 127 69.3
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 3.6e-40 168.3 124 70.2
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.6e-40 168.3 124 69.4
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.6e-40 168.3 124 69.4
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 3.6e-40 168.3 124 69.4
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 4.7e-40 167.9 128 68.0
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 4.7e-40 167.9 124 70.2
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 4.7e-40 167.9 124 69.4
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 6.1e-40 167.5 124 68.5
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 1.0e-39 166.8 124 71.0
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 1.0e-39 166.8 124 70.2
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.4e-39 166.4 124 69.4
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 1.4e-39 166.4 124 66.9
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.4e-39 166.4 127 67.7
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.4e-39 166.4 127 68.5
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 1.8e-39 166.0 124 68.5
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 2.3e-39 165.6 127 69.3
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 2.3e-39 165.6 124 71.0
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 2.3e-39 165.6 124 68.5
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 3.0e-39 165.2 124 69.4
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 3.0e-39 165.2 124 66.9
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 3.0e-39 165.2 127 66.1
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 3.0e-39 165.2 124 70.2
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 3.0e-39 165.2 124 68.5
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 3.9e-39 164.9 124 66.1
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 3.9e-39 164.9 131 67.9
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 8.8e-39 163.7 130 68.5
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 8.8e-39 163.7 124 67.7
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 8.8e-39 163.7 137 65.0
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 8.8e-39 163.7 137 65.0
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 8.8e-39 163.7 124 69.4
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 2.0e-38 162.5 128 68.0
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 2.6e-38 162.2 124 67.7
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 2.6e-38 162.2 124 67.7
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 4.4e-38 161.4 124 66.1
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 4.4e-38 161.4 124 66.9
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 4.4e-38 161.4 127 66.1
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 5.7e-38 161.0 124 67.7
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.3e-37 159.8 125 64.8
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 1.3e-37 159.8 125 64.8
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.7e-37 159.5 124 66.1
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 2.2e-37 159.1 124 65.3
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 2.8e-37 158.7 124 65.3
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 3.7e-37 158.3 124 65.3
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 3.7e-37 158.3 123 68.3
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 6.3e-37 157.5 124 66.1
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 8.2e-37 157.1 124 68.5
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 2.4e-36 155.6 135 56.3
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 2.4e-36 155.6 127 65.4
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 3.5e-35 151.8 124 63.7
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 4.5e-35 151.4 124 60.5
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 7.7e-35 150.6 136 55.1
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 1.7e-34 149.4 125 64.0
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 2.2e-34 149.1 124 64.5
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 3.8e-34 148.3 115 67.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 3.8e-34 148.3 115 67.0
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 4.7e-32 141.4 124 61.3
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 6.1e-32 141.0 128 58.6
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.4e-31 139.8 108 67.6
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 2.3e-31 139.0 109 63.3
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.5e-30 136.3 127 55.9
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 4.4e-30 134.8 127 55.1
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 2.8e-29 132.1 108 64.8
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 2.8e-29 132.1 110 61.8
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 6.3e-29 131.0 124 54.8
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 1.7e-21 106.3 57 82.5
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 4.8e-21 104.8 59 84.7
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 6.3e-21 104.4 125 45.6
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 1.8e-20 102.8 105 53.3
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 2.4e-20 102.4 106 54.7
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 3.1e-20 102.1 127 44.9
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 4.1e-20 101.7 62 74.2
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 1.2e-19 100.1 105 53.3
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 4.5e-19 98.2 58 79.3
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 4.5e-19 98.2 60 76.7
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 5.9e-19 97.8 58 74.1
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 6.5e-18 94.4 123 38.2
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 2.8e-13 79.0 115 40.9
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 2.5e-09 65.9 68 57.4
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 1.6e-08 63.2 42 73.8
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-08 61.2 64 51.6


User provided reference genes

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