Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006771 Rosa chinensis HOM05D007756 ORTHO05D009403 1.6e-25 118.6 59 100.0
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 3.9e-24 114.0 59 98.3
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 4.8e-14 80.5 62 72.6
MD10G1301200 Malus domestica HOM05D007756 ORTHO05D009403 2.9e-11 71.2 65 66.2
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 6.1e-09 63.5 60 60.0
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.0e-08 61.2 58 60.3
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 6.7e-08 60.1 67 56.7
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 8.8e-08 59.7 46 65.2
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.5e-07 58.9 59 52.5
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.0e-07 58.5 59 54.2
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 2.0e-07 58.5 59 54.2
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 2.0e-07 58.5 47 59.6
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 4.4e-07 57.4 47 59.6
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.4e-07 57.4 46 58.7
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.4e-07 57.4 46 58.7
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 7.4e-07 56.6 55 58.2
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 9.7e-07 56.2 46 63.0
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 9.7e-07 56.2 46 56.5
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 1.3e-06 55.8 46 63.0
ClCG01G022590 Citrullus lanatus HOM05D007756 ORTHO05D009403 1.3e-06 55.8 39 66.7
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.3e-06 55.8 59 52.5
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 1.7e-06 55.5 46 63.0
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 1.7e-06 55.5 46 60.9
CiPaw.10G120500 Carya illinoinensis HOM05D007756 ORTHO05D009403 3.7e-06 54.3 48 60.4
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 8.2e-06 53.1 46 67.4


User provided reference genes

Program Settings