Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.5e-39 165.6 80 100.0
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.5e-39 165.6 80 100.0
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 1.7e-38 162.2 80 97.5
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.7e-38 162.2 80 97.5
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.7e-38 162.2 80 97.5
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.7e-38 162.2 80 97.5
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.1e-37 159.5 80 96.2
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 7.7e-31 136.7 81 80.2
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.2e-29 131.3 80 77.5
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 3.2e-29 131.3 80 77.5
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.2e-29 131.0 81 76.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 7.2e-29 130.2 81 76.5
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 7.2e-29 130.2 80 76.2
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 75.3
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.7e-28 128.3 81 77.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.7e-28 128.3 81 77.8
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 3.6e-28 127.9 80 72.5
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 75.3
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 74.1
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 75.3
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 74.1
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 74.1
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 74.1
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 71.6
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 72.8
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 72.8
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 3.9e-27 124.4 81 74.1
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 3.9e-27 124.4 81 72.8
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 6.7e-27 123.6 81 74.1
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 6.7e-27 123.6 81 74.1
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 6.7e-27 123.6 81 75.3
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 8.8e-27 123.2 81 75.3
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 1.1e-26 122.9 81 71.6
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 74.1
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 74.1
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 74.1
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 72.8
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 3.3e-26 121.3 81 71.6
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 3.3e-26 121.3 81 72.8
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 4.3e-26 120.9 81 71.6
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 70.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 72.8
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 70.4
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 9.7e-26 119.8 81 72.8
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 70.4
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.7e-25 119.0 82 73.2
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 71.6
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.7e-25 119.0 80 67.5
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.7e-25 119.0 80 67.5
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 69.1
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.8e-25 118.2 81 70.4
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 81 67.9
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 6.3e-25 117.1 80 67.5
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 6.3e-25 117.1 80 67.5
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 6.3e-25 117.1 80 67.5
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 6.3e-25 117.1 80 67.5
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 8.2e-25 116.7 80 67.5
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.1e-24 116.3 79 70.9
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 66.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 70.4
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 70.4
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 69.1
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 1.8e-24 115.5 80 66.2
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 70.4
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 2.4e-24 115.2 80 66.2
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 69.1
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 70.4
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 69.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 69.1
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 5.3e-24 114.0 81 66.7
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 5.3e-24 114.0 81 69.1
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 5.3e-24 114.0 81 66.7
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.9e-24 113.6 57 94.7
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 9.1e-24 113.2 81 67.9
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.5e-23 112.5 81 66.7
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 66.7
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 2.0e-23 112.1 82 69.5
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 3.4e-23 111.3 82 67.1
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 63.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 63.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 2.2e-22 108.6 81 65.4
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 2.2e-22 108.6 81 65.4
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 3.8e-22 107.8 81 65.4
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.4e-21 105.9 81 63.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 63.0
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 5.5e-21 104.0 79 62.0
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 61.7
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.2e-20 102.8 79 63.3
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 3.6e-20 101.3 81 60.5
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.6e-20 101.3 79 63.3
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.5e-18 95.9 76 60.5
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 4.4e-18 94.4 78 52.6
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 4.8e-17 90.9 57 70.2
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 8.2e-17 90.1 59 74.6
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.4e-16 89.4 57 66.7
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 3.1e-16 88.2 59 72.9
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 4.1e-16 87.8 81 51.9
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 5.3e-16 87.4 70 57.1
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.5e-15 84.7 79 50.6
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 5.9e-15 84.0 59 71.2
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 7.7e-15 83.6 57 59.6
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.3e-14 82.8 57 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.9e-13 79.0 76 51.3
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.6e-12 75.9 79 46.8
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 2.1e-12 75.5 37 91.9
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 6.1e-12 73.9 45 66.7
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 5.7e-10 67.4 77 50.6
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.1e-08 63.2 44 75.0
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.1e-08 63.2 44 75.0
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 7.0e-08 60.5 40 77.5
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.0e-06 56.6 45 57.8


User provided reference genes

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