Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.9e-153 545.8 277 100.0
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.2e-69 266.5 322 51.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.2e-69 266.5 322 52.5
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 4.6e-67 258.8 322 50.3
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 3.9e-58 229.2 322 46.9
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 5.7e-57 225.3 322 47.2
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 1.6e-56 223.8 322 45.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-53 214.2 424 38.4
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.2e-51 207.6 323 43.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.6e-51 207.2 323 44.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 4.6e-51 205.7 323 44.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 1.1e-49 201.1 321 40.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 2.0e-49 200.3 325 40.9
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 9.7e-49 198.0 331 42.6
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.8e-48 196.4 319 40.4
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 3.7e-48 196.1 325 42.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 6.9e-47 191.8 323 41.2
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.2e-46 191.0 323 40.2
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.5e-46 189.1 324 40.7
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 7.7e-46 188.3 323 39.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 2.9e-45 186.4 324 40.1
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 3.8e-45 186.0 318 39.3
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 5.5e-44 182.2 324 38.6
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 5.5e-44 182.2 322 38.8
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 9.4e-44 181.4 323 39.3
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 9.4e-44 181.4 324 38.6
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 1.2e-43 181.0 323 40.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 2.1e-43 180.3 340 38.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 6.1e-43 178.7 321 38.3
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 1.0e-42 177.9 323 36.8
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.8e-42 177.2 324 38.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 2.3e-42 176.8 324 38.0
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.0e-42 176.4 320 36.2
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 3.0e-42 176.4 323 38.7
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 3.9e-42 176.0 325 39.4
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 6.7e-42 175.3 318 39.0
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 8.8e-42 174.9 324 38.3
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.1e-41 174.5 324 38.0
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.1e-41 174.5 323 39.0
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.5e-41 174.1 320 36.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.0e-41 173.7 323 39.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 2.0e-41 173.7 324 38.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 4.4e-41 172.6 320 35.6
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 5.7e-41 172.2 321 36.1
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 9.7e-41 171.4 320 36.2
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 9.7e-41 171.4 320 37.2
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 2.2e-40 170.2 320 36.6
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 2.2e-40 170.2 322 35.1
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.8e-40 169.9 320 36.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.8e-40 169.9 320 35.0
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.7e-40 169.5 326 37.7
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 4.8e-40 169.1 320 35.0
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 4.8e-40 169.1 320 35.0
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 4.8e-40 169.1 320 35.0
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 6.3e-40 168.7 320 35.9
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 6.3e-40 168.7 323 38.4
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 6.3e-40 168.7 291 41.9
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 8.2e-40 168.3 320 35.3
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.1e-39 167.9 326 37.4
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 3.1e-39 166.4 349 35.2
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 9.1e-39 164.9 295 38.6
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.0e-38 163.7 335 35.5
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.6e-38 163.3 339 34.5
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.5e-38 162.9 323 36.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.9e-38 162.2 323 37.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 7.7e-38 161.8 312 36.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 7.7e-38 161.8 323 37.5
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 7.7e-38 161.8 318 36.8
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 7.7e-38 161.8 318 36.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.0e-37 161.4 323 35.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.0e-37 161.4 318 36.2
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.3e-37 161.0 323 37.2
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.3e-37 161.0 308 36.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 5.5e-36 155.6 323 35.9
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.2e-36 155.2 323 35.9
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.4e-34 151.0 320 33.1
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.3e-33 146.4 380 30.3
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.4e-31 141.0 318 31.8
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.8e-31 140.6 319 35.1
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.4e-31 140.2 320 34.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.3e-29 134.4 322 33.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 6.5e-29 132.1 127 56.7
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 4.4e-25 119.4 274 33.9
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 4.4e-25 119.4 127 48.8
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 2.2e-24 117.1 127 48.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.8e-23 114.0 92 67.4
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-23 113.2 78 71.8
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.0e-22 110.5 92 66.3
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 4.5e-22 109.4 83 67.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.3e-21 107.8 335 28.7
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 2.9e-21 106.7 106 54.7
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.9e-20 104.0 81 64.2
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.5e-20 103.6 83 61.4
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.5e-20 103.6 307 30.6
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 5.5e-20 102.4 277 29.2
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 9.5e-20 101.7 149 44.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-19 100.5 272 32.0
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-19 99.8 76 65.8
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.6e-19 99.8 289 30.4
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 2.3e-18 97.1 103 51.5
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 4.9e-16 89.4 96 51.0
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 7.0e-15 85.5 167 35.3
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.0e-13 81.6 89 48.3
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.8e-13 79.7 91 50.5
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.1e-12 78.2 62 69.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.3e-12 76.6 71 54.9
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 4.3e-12 76.3 59 62.7
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.7e-11 72.8 66 59.1
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 6.1e-11 72.4 77 51.9
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.0e-11 72.0 88 45.5
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.4e-10 71.2 66 56.1
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 4.0e-10 69.7 62 62.9
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 1.2e-09 68.2 60 55.0
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.7e-09 65.9 51 64.7
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.7e-08 63.2 62 61.3
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.9e-08 62.8 126 32.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.1e-07 59.7 82 39.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.6e-06 56.2 54 55.6


User provided reference genes

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