Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006191 Rosa chinensis HOM05D003219 ORTHO05D005190 9.9e-77 290.0 147 100.0
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 6.3e-55 217.6 156 71.2
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 1.4e-51 206.5 156 69.9
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 2.3e-49 199.1 154 68.8
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 1.1e-48 196.8 156 64.7
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 1.1e-48 196.8 156 65.4
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 1.5e-48 196.4 156 65.4
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 2.6e-48 195.7 156 65.4
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 3.3e-48 195.3 156 64.1
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 4.4e-48 194.9 156 64.7
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 4.4e-48 194.9 156 64.7
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 4.4e-48 194.9 156 64.7
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 5.7e-48 194.5 156 64.1
vmacro23297 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 5.7e-48 194.5 156 64.1
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 9.7e-48 193.7 156 64.7
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 1.3e-47 193.4 156 64.1
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 1.7e-47 193.0 156 63.5
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 1.7e-47 193.0 156 63.5
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 2.2e-47 192.6 156 63.5
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 2.8e-47 192.2 156 63.5
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 2.8e-47 192.2 156 63.5
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 2.8e-47 192.2 156 64.1
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 2.8e-47 192.2 156 64.1
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 2.8e-47 192.2 156 63.5
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 3.7e-47 191.8 156 63.5
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 3.7e-47 191.8 156 63.5
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 4.8e-47 191.4 156 63.5
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 4.8e-47 191.4 156 63.5
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 4.8e-47 191.4 156 62.8
Dinv40503 Davidia involucrata HOM05D003219 ORTHO05D005190 4.8e-47 191.4 156 62.8
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 4.8e-47 191.4 156 63.5
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 6.3e-47 191.0 156 64.1
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 6.3e-47 191.0 156 62.8
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 6.3e-47 191.0 156 63.5
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 8.2e-47 190.7 156 62.8
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 1.1e-46 190.3 156 62.8
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 1.4e-46 189.9 156 62.8
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.8e-46 189.5 156 62.8
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 1.8e-46 189.5 156 63.5
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 1.8e-46 189.5 156 63.5
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 1.8e-46 189.5 156 62.8
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 1.8e-46 189.5 156 62.2
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 2.4e-46 189.1 156 62.2
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 2.4e-46 189.1 156 62.2
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 2.4e-46 189.1 156 62.8
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 2.4e-46 189.1 156 62.2
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 3.1e-46 188.7 139 70.5
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.1e-46 188.7 139 70.5
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 3.1e-46 188.7 156 62.8
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 3.1e-46 188.7 156 62.2
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 4.1e-46 188.3 156 62.8
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 4.1e-46 188.3 156 62.8
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 4.1e-46 188.3 156 62.8
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 4.1e-46 188.3 156 62.8
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 4.1e-46 188.3 156 62.8
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 5.3e-46 188.0 156 60.9
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 7.0e-46 187.6 156 65.4
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.0e-46 187.6 156 65.4
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.0e-46 187.6 156 65.4
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.0e-46 187.6 156 65.4
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 7.0e-46 187.6 156 62.2
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 9.1e-46 187.2 156 61.5
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 1.2e-45 186.8 156 61.5
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 1.2e-45 186.8 156 61.5
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 1.2e-45 186.8 156 61.5
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 1.2e-45 186.8 156 62.2
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 1.5e-45 186.4 156 60.3
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 2.0e-45 186.0 156 61.5
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 2.6e-45 185.7 156 60.9
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 2.6e-45 185.7 172 59.3
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 2.6e-45 185.7 156 61.5
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 3.4e-45 185.3 156 62.2
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 4.5e-45 184.9 163 60.7
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 5.9e-45 184.5 156 60.3
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 7.7e-45 184.1 156 60.9
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 7.7e-45 184.1 156 61.5
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 1.0e-44 183.7 156 61.5
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 1.0e-44 183.7 156 60.9
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 1.0e-44 183.7 156 60.9
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.3e-44 183.3 156 59.6
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 1.3e-44 183.3 156 60.3
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 1.3e-44 183.3 156 59.0
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 1.7e-44 183.0 156 59.0
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 1.7e-44 183.0 156 59.0
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 3.8e-44 181.8 156 59.6
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 3.8e-44 181.8 156 60.9
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 5.0e-44 181.4 156 60.3
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 5.0e-44 181.4 155 59.4
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 6.5e-44 181.0 156 60.3
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 6.5e-44 181.0 156 60.3
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 6.5e-44 181.0 156 60.3
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 6.5e-44 181.0 156 60.3
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 6.5e-44 181.0 155 58.7
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 1.1e-43 180.3 156 60.3
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 1.4e-43 179.9 156 59.6
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 1.4e-43 179.9 156 59.6
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 1.9e-43 179.5 156 59.0
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 1.9e-43 179.5 156 60.3
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 2.5e-43 179.1 156 59.0
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 3.2e-43 178.7 156 59.6
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 4.2e-43 178.3 156 57.7
SEGI_14928 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 4.2e-43 178.3 156 57.7
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 5.5e-43 177.9 156 59.0
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 2.1e-42 176.0 136 69.9
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 2.7e-42 175.6 156 57.7
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 6.1e-42 174.5 156 57.1
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 2.6e-40 169.1 136 65.4
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 9.7e-40 167.2 138 62.3
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 1.7e-39 166.4 156 53.2
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 6.3e-39 164.5 140 62.1
Cpa.g.sc27.112 Carica papaya HOM05D003219 ORTHO05D005190 6.3e-39 164.5 136 63.2
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 1.8e-38 162.9 157 56.7
Nn2g13017 Nelumbo nucifera HOM05D003219 ORTHO05D005190 4.1e-38 161.8 133 63.9
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 9.1e-38 160.6 138 62.3
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 2.6e-37 159.1 152 53.9
Zm00001eb110380 Zea mays HOM05D003219 ORTHO05D005190 7.7e-37 157.5 137 60.6
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 1.0e-36 157.1 158 54.4
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 1.7e-36 156.4 140 58.6
Aqoxy7G03800 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 2.2e-36 156.0 155 49.7
Mapoly0119s0057 Marchantia polymorpha HOM05D003219 ORTHO05D005190 6.5e-36 154.5 156 51.3
Zm00001eb329230 Zea mays HOM05D003219 ORTHO05D005190 1.1e-35 153.7 134 60.4
PRCOL_00006288 Prasinoderma coloniale HOM05D003219 ORTHO05D005190 2.7e-34 149.1 152 50.7
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 6.1e-34 147.9 139 56.8
MBI11_g22684_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 1.4e-33 146.7 136 55.9
Os07g0644300 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 1.4e-33 146.7 133 58.6
Cre12.g513500 Chlamydomonas reinhardtii HOM05D003219 ORTHO05D005190 2.4e-30 136.0 152 46.7
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 3.1e-30 135.6 152 48.0
Os06g0235800 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 2.2e-28 129.4 158 43.7
Actinidia01932 Actinidia chinensis HOM05D003219 ORTHO05D005190 1.1e-27 127.1 139 52.5
FAN21G3557 Fragaria x ananassa HOM05D003219 ORTHO05D005190 9.4e-27 124.0 100 67.0
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 9.4e-27 124.0 140 50.7
Cfa023613 Carpinus fangiana HOM05D003219 ORTHO05D005190 2.1e-26 122.9 154 42.9
Haze_26834 Corylus avellana HOM05D003219 ORTHO05D005190 3.0e-25 119.0 151 41.1
BcaNung02109 Brassica carinata HOM05D003219 ORTHO05D018367 4.0e-25 118.6 113 54.0
Dinv39809 Davidia involucrata HOM05D003219 ORTHO05D018367 2.6e-24 115.9 107 54.2
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 7.5e-24 114.4 178 37.6
MCO01G142 Micromonas commoda HOM05D003219 ORTHO05D005190 1.7e-23 113.2 151 38.4
BcaNung05343 Brassica carinata HOM05D003219 ORTHO05D005190 8.3e-23 110.9 158 43.0
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 2.4e-22 109.4 158 43.7
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 3.1e-22 109.0 158 43.0
Aqoxy7G01388 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 9.1e-22 107.5 139 43.9
Os01g0686600 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 1.6e-21 106.7 134 44.0
Aqoxy7G04117 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.5e-21 105.5 132 43.9
BcaC05g27821 Brassica carinata HOM05D003219 ORTHO05D020042 7.7e-21 104.4 130 46.9
C05p38210 Brassica napus HOM05D003219 ORTHO05D020042 3.8e-20 102.1 128 46.9
BolC5t32549H Brassica oleracea HOM05D003219 ORTHO05D020042 3.8e-20 102.1 128 46.9
VMungo0464G0452 Vigna mungo HOM05D003219 ORTHO05D005190 9.5e-19 97.4 65 73.8
Potri.011G043812 Populus trichocarpa HOM05D003219 ORTHO05D005190 1.0e-17 94.0 128 45.3
Sopen03g007850 Solanum pennellii HOM05D003219 ORTHO05D005190 2.0e-16 89.7 67 62.7
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 1.3e-15 87.0 154 34.4
C07p40150 Brassica napus HOM05D003219 ORTHO05D018367 7.0e-14 81.3 53 69.8
BolC7t44552H Brassica oleracea HOM05D003219 ORTHO05D018367 1.2e-13 80.5 53 67.9
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 1.3e-12 77.0 47 72.3
BcaC02g10920 Brassica carinata HOM05D003219 ORTHO05D027510 2.3e-12 76.3 88 50.0
GSVIVG01006714001 Vitis vinifera HOM05D003219 ORTHO05D005190 1.1e-11 73.9 91 44.0
Actinidia05586 Actinidia chinensis HOM05D003219 ORTHO05D005190 4.7e-10 68.6 49 63.3
BcaC07g37857 Brassica carinata HOM05D003219 ORTHO05D027510 1.0e-09 67.4 86 45.3
C04p20450 Brassica napus HOM05D011137 ORTHO05D020042 1.4e-09 67.0 90 42.2
A10p11140 Brassica napus HOM05D003219 ORTHO05D020042 5.2e-09 65.1 65 50.8
Solyc03g150110.1 Solanum lycopersicum HOM05D003219 ORTHO05D390491 1.2e-08 63.9 90 42.2
BolC4t23865H Brassica oleracea HOM05D003219 ORTHO05D027510 5.8e-08 61.6 89 43.8
THA.LOC104798482 Tarenaya hassleriana HOM05D003219 ORTHO05D406890 5.8e-08 61.6 101 36.6
FAN21G0395 Fragaria x ananassa HOM05D003219 ORTHO05D005190 2.9e-07 59.3 32 78.1
C04p23680 Brassica napus HOM05D003219 ORTHO05D027510 6.4e-07 58.2 89 42.7


User provided reference genes

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