Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-55 218.4 110 100.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-41 172.9 110 81.8
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-41 172.2 110 80.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-37 158.7 134 67.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-33 146.7 110 71.8
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-27 125.6 109 57.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 5.1e-25 117.9 112 57.1
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-23 112.8 109 56.9
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-23 111.3 109 56.0
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.4e-21 105.1 105 51.4
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 3.8e-20 101.7 100 54.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.4e-19 99.8 108 47.2
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.2e-19 98.6 110 45.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.1e-19 97.4 110 44.5
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 6.0e-18 94.4 108 48.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.0e-17 93.6 108 42.6
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-17 93.2 109 43.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-17 93.2 109 44.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-17 92.0 110 41.8
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.9e-17 91.7 106 46.2
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.9e-17 91.7 106 43.4
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-17 91.3 57 63.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 5.1e-17 91.3 111 46.8
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 5.1e-17 91.3 110 42.7
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 6.6e-17 90.9 110 42.7
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.7e-17 90.5 93 48.4
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 8.7e-17 90.5 106 47.2
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.5e-16 89.7 115 41.7
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.5e-16 89.7 115 41.7
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.3e-16 88.6 108 44.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.3e-16 88.6 107 43.9
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.3e-16 88.2 106 43.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 7.3e-16 87.4 114 44.7
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.6e-16 87.0 110 38.2
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.2e-15 86.7 107 45.8
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.6e-15 86.3 108 46.3
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 2.1e-15 85.9 103 40.8
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 4.7e-15 84.7 99 45.5
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.2e-15 84.3 110 40.0
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.1e-15 84.0 101 44.6
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.1e-15 84.0 101 45.5
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 8.1e-15 84.0 110 43.6
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 8.1e-15 84.0 93 43.0
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 8.1e-15 84.0 53 64.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 8.1e-15 84.0 110 41.8
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 8.1e-15 84.0 107 45.8
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.1e-15 84.0 107 45.8
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-14 83.6 96 45.8
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-14 83.6 103 44.7
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-14 83.6 95 41.1
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-14 83.2 106 46.2
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.8e-14 82.8 93 47.3
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.8e-14 82.8 106 42.5
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-14 82.4 93 46.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-14 82.4 93 46.2
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 2.4e-14 82.4 107 43.9
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.1e-14 82.0 54 63.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.1e-14 82.0 54 63.0
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.1e-14 82.0 107 41.1
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 3.1e-14 82.0 110 45.5
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.1e-14 82.0 107 43.0
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 4.0e-14 81.6 106 37.7
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 4.0e-14 81.6 110 40.9
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.9e-14 80.9 55 61.8
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.0e-14 80.5 55 61.8
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.0e-14 80.5 106 42.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-13 80.1 92 45.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-13 80.1 110 40.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.5e-13 79.7 98 38.8
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.5e-13 79.7 110 40.9
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.0e-13 79.3 53 64.2
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.0e-13 79.3 53 64.2
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-13 79.3 93 40.9
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.6e-13 79.0 98 39.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.6e-13 79.0 55 58.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-13 78.6 102 41.2
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-13 78.6 106 39.6
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 3.4e-13 78.6 111 38.7
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 3.4e-13 78.6 53 60.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.4e-13 78.2 84 47.6
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.4e-13 78.2 103 40.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.4e-13 78.2 112 42.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-13 77.8 94 41.5
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-13 77.8 94 41.5
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.8e-13 77.8 103 41.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 5.8e-13 77.8 53 58.5
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 5.8e-13 77.8 53 58.5
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.6e-13 77.4 104 39.4
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 7.6e-13 77.4 106 37.7
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-12 76.6 104 41.3
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.3e-12 76.6 91 39.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-12 76.6 106 35.8
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.7e-12 76.3 110 34.5
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.2e-12 75.9 54 53.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.2e-12 75.9 49 61.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-12 75.9 106 35.8
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-12 75.9 106 37.7
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.9e-12 75.5 54 55.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.9e-12 75.5 93 41.9
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-12 74.7 51 52.9
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 6.4e-12 74.3 106 43.4
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 6.4e-12 74.3 49 57.1
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 6.4e-12 74.3 49 57.1
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.1e-11 73.6 111 38.7
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-11 73.2 55 58.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-11 73.2 100 41.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.9e-11 72.8 60 53.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.9e-11 72.8 101 36.6
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.9e-11 72.8 101 36.6
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.4e-11 72.4 91 37.4
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 3.2e-11 72.0 106 40.6
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 3.2e-11 72.0 106 40.6
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.2e-11 72.0 103 36.9
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.2e-11 72.0 106 36.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.2e-11 72.0 55 54.5
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 4.2e-11 71.6 90 43.3
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.1e-11 70.9 49 59.2
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-11 70.9 101 35.6
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-11 70.9 91 41.8
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 9.3e-11 70.5 101 36.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-10 70.1 99 40.4
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-10 69.7 55 50.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.1e-10 69.3 102 35.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-10 69.3 104 34.6
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.1e-10 69.3 94 36.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-10 68.9 93 38.7
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-10 68.6 49 53.1
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.5e-10 68.6 53 49.1
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-10 68.6 98 38.8
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 3.5e-10 68.6 60 41.7
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 6.0e-10 67.8 75 42.7
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-09 66.6 50 46.0
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-09 66.6 91 38.5
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-09 66.2 108 38.0
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.0e-09 65.5 110 34.5
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.0e-09 65.5 49 49.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 3.0e-09 65.5 106 39.6
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.9e-09 65.1 103 34.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-09 64.7 91 35.2
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-09 64.7 91 35.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.1e-09 64.7 52 48.1
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 6.6e-09 64.3 62 38.7
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-08 63.5 89 40.4
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-08 63.5 101 30.7
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-08 63.2 108 36.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-08 63.2 108 36.1
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.5e-08 63.2 52 50.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.9e-08 62.8 95 35.8
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-08 62.8 112 34.8
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-08 62.8 87 35.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.3e-08 62.0 70 41.4
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 3.3e-08 62.0 91 37.4
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-08 61.6 51 49.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 4.3e-08 61.6 100 31.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 4.3e-08 61.6 62 40.3
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 4.3e-08 61.6 51 52.9
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.3e-08 61.6 46 52.2
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 5.6e-08 61.2 91 35.2
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.6e-08 61.2 112 33.9
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.6e-08 61.2 59 39.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 5.6e-08 61.2 91 35.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 5.6e-08 61.2 64 40.6
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.3e-08 60.8 40 60.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.3e-08 60.8 106 34.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 9.6e-08 60.5 61 36.1
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.3e-07 60.1 43 48.8
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.3e-07 60.1 109 38.5
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-07 59.7 103 27.2
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-07 59.7 103 27.2
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-07 59.3 57 47.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-07 59.3 52 42.3
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-07 58.9 106 33.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-07 58.9 98 28.6
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.6e-07 58.5 107 35.5
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 8.1e-07 57.4 41 51.2
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.1e-07 57.4 125 30.4
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-06 57.0 52 40.4
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-06 56.2 101 32.7
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 3.1e-06 55.5 95 32.6
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 9.0e-06 53.9 107 34.6
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 9.0e-06 53.9 98 35.7


User provided reference genes

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