Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0006121 Rosa chinensis HOM05D007380 ORTHO05D009269 1.4e-81 306.2 149 100.0
FAN21G2116 Fragaria x ananassa HOM05D007380 ORTHO05D009269 9.1e-70 266.9 150 88.0
FvH4_3g03870 Fragaria vesca HOM05D007380 ORTHO05D009269 2.0e-69 265.8 150 87.3
Prupe.4G035400 Prunus persica HOM05D007380 ORTHO05D009269 2.0e-53 212.6 148 75.0
MD05G1326300 Malus domestica HOM05D007380 ORTHO05D009269 5.0e-52 208.0 149 71.1
Gohir.A06G123100 Gossypium hirsutum HOM05D007380 ORTHO05D009269 1.2e-48 196.8 151 71.5
Gorai.010G149500 Gossypium raimondii HOM05D007380 ORTHO05D009269 2.6e-48 195.7 151 71.5
Duzib235G0816 Durio zibethinus HOM05D007380 ORTHO05D009269 7.5e-48 194.1 146 71.9
Cfa000344 Carpinus fangiana HOM05D007380 ORTHO05D009269 9.8e-48 193.7 150 70.0
Gohir.D06G127800 Gossypium hirsutum HOM05D007380 ORTHO05D009269 1.3e-47 193.4 151 70.9
QL05p081084 Quercus lobata HOM05D007380 ORTHO05D009269 2.2e-47 192.6 147 70.7
Haze_06587 Corylus avellana HOM05D007380 ORTHO05D009269 2.9e-47 192.2 150 71.3
CiPaw.10G117700 Carya illinoinensis HOM05D007380 ORTHO05D009269 4.6e-45 184.9 145 69.0
Hma1.2p1_1182F.1_g264770 Hydrangea macrophylla HOM05D007380 ORTHO05D009269 1.0e-44 183.7 145 70.3
GSVIVG01003660001 Vitis vinifera HOM05D007380 ORTHO05D009269 5.0e-44 181.4 143 66.4
CSS0018060 Camellia sinensis var. sinensis HOM05D007380 ORTHO05D009269 1.6e-42 176.4 146 67.8
Thecc.06G201000 Theobroma cacao HOM05D007380 ORTHO05D009269 2.8e-42 175.6 135 72.6
Potri.004G033400 Populus trichocarpa HOM05D007380 ORTHO05D009269 3.6e-42 175.3 146 65.1
PGR042G0893 Punica granatum HOM05D007380 ORTHO05D009269 4.7e-42 174.9 146 60.3
TWI38G1816 Tripterygium wilfordii HOM05D007380 ORTHO05D009269 4.7e-42 174.9 151 64.9
Ciclev10017095m.g Citrus clementina HOM05D007380 ORTHO05D009269 8.1e-42 174.1 146 64.4
Potri.011G041800 Populus trichocarpa HOM05D007380 ORTHO05D009269 1.4e-41 173.3 143 65.7
Atru.chr10.2021 Acer truncatum HOM05D007380 ORTHO05D009269 1.8e-41 172.9 147 65.3
TAR626G0266 Trochodendron aralioides HOM05D007380 ORTHO05D009269 6.8e-41 171.0 147 62.6
Phvul.010G144100 Phaseolus vulgaris HOM05D007380 ORTHO05D009269 1.2e-40 170.2 146 64.4
Actinidia24054 Actinidia chinensis HOM05D007380 ORTHO05D009269 4.4e-40 168.3 143 64.3
PSO210G2614 Papaver somniferum HOM05D007380 ORTHO05D009269 4.4e-40 168.3 154 63.0
Sabra04G0019200 Salix brachista HOM05D007380 ORTHO05D009269 1.3e-39 166.8 139 62.6
VMungo0331G1388 Vigna mungo HOM05D007380 ORTHO05D009269 4.9e-39 164.9 146 59.6
EL10Ac8g20541 Beta vulgaris HOM05D007380 ORTHO05D009269 1.4e-38 163.3 158 57.6
Ah.14g088860 Amaranthus hybridus HOM05D007380 ORTHO05D009269 1.9e-38 162.9 108 74.1
Manes.16G019900 Manihot esculenta HOM05D007380 ORTHO05D009269 1.9e-38 162.9 146 60.3
Psat1g208920 Pisum sativum HOM05D007380 ORTHO05D009269 1.9e-38 162.9 146 59.6
TPR.G36752 Trifolium pratense HOM05D007380 ORTHO05D009269 2.4e-38 162.5 146 60.3
TWI63G1146 Tripterygium wilfordii HOM05D007380 ORTHO05D009269 2.4e-38 162.5 135 66.7
AUR62014709 Chenopodium quinoa HOM05D007380 ORTHO05D009269 3.2e-38 162.2 98 79.6
Rhsim02G0119200 Rhododendron simsii HOM05D007380 ORTHO05D009269 3.2e-38 162.2 148 60.8
Medtr2g011720 Medicago truncatula HOM05D007380 ORTHO05D009269 4.1e-38 161.8 145 57.9
CANSAT54G0392 Cannabis sativa HOM05D007380 ORTHO05D009269 9.2e-38 160.6 153 58.8
AUR62012486 Chenopodium quinoa HOM05D007380 ORTHO05D009269 9.2e-38 160.6 85 88.2
BcaNung02797 Brassica carinata HOM05D007380 ORTHO05D009269 1.2e-37 160.2 148 56.8
Glyma.15G067000 Glycine max HOM05D007380 ORTHO05D009269 1.2e-37 160.2 148 63.5
Lj6g0018389 Lotus japonicus HOM05D007380 ORTHO05D009269 2.1e-37 159.5 131 68.7
Lalb_Chr15g0090121 Lupinus albus HOM05D007380 ORTHO05D009269 3.5e-37 158.7 138 63.8
Glyma.13G246900 Glycine max HOM05D007380 ORTHO05D009269 4.6e-37 158.3 148 59.5
MELO3C007327.2 Cucumis melo HOM05D007380 ORTHO05D009269 6.0e-37 157.9 128 62.5
ClCG00G003830 Citrullus lanatus HOM05D007380 ORTHO05D009269 7.8e-37 157.5 92 79.3
ClCG01G022490 Citrullus lanatus HOM05D007380 ORTHO05D009269 7.8e-37 157.5 92 79.3
Oeu027967.1 Olea europaea HOM05D007380 ORTHO05D009269 7.8e-37 157.5 141 61.0
MBI18_g27684_MAGBIO Magnolia biondii HOM05D007380 ORTHO05D009269 1.0e-36 157.1 145 60.0
Peaxi162Scf00371g00913 Petunia axillaris HOM05D007380 ORTHO05D009269 1.0e-36 157.1 145 59.3
FAN25G1236 Fragaria x ananassa HOM05D007380 ORTHO05D009269 3.0e-36 155.6 77 96.1
Nitab4.5_0002222g0060 Nicotiana tabacum HOM05D007380 ORTHO05D009269 3.0e-36 155.6 147 62.6
arahy.Tifrunner.gnm1.ann1.TYQ19L Arachis hypogaea HOM05D007380 ORTHO05D009269 5.1e-36 154.8 95 76.8
arahy.Tifrunner.gnm1.ann1.5E52J9 Arachis hypogaea HOM05D007380 ORTHO05D009269 6.6e-36 154.5 134 59.7
Carub.0007s1978 Capsella rubella HOM05D007380 ORTHO05D009269 6.6e-36 154.5 143 55.9
unitig_26.g9377 Utricularia gibba HOM05D007380 ORTHO05D009269 6.6e-36 154.5 102 78.4
CsaV3_6G049660 Cucumis sativus L. HOM05D007380 ORTHO05D009269 8.6e-36 154.1 137 58.4
Sp7g19570 Schrenkiella parvula HOM05D007380 ORTHO05D009269 8.6e-36 154.1 146 53.4
PGSC0003DMG400011277 Solanum tuberosum HOM05D007380 ORTHO05D009269 8.6e-36 154.1 146 58.2
BcaC06g30665 Brassica carinata HOM05D007380 ORTHO05D009269 1.5e-35 153.3 148 54.7
Sopen10g001450 Solanum pennellii HOM05D007380 ORTHO05D009269 1.5e-35 153.3 86 83.7
Solyc10g005470.3 Solanum lycopersicum HOM05D007380 ORTHO05D009269 1.9e-35 152.9 146 58.2
BcaNung00855 Brassica carinata HOM05D007380 ORTHO05D009269 3.3e-35 152.1 101 72.3
C07p51220 Brassica napus HOM05D007380 ORTHO05D009269 3.3e-35 152.1 101 72.3
BolC7t45622H Brassica oleracea HOM05D007380 ORTHO05D009269 3.3e-35 152.1 101 72.3
Sed0001213 Sechium edule HOM05D007380 ORTHO05D009269 4.3e-35 151.8 147 57.1
A01p12760 Brassica napus HOM05D007380 ORTHO05D009269 5.6e-35 151.4 97 76.3
BraA01t01220Z Brassica rapa HOM05D007380 ORTHO05D009269 5.6e-35 151.4 97 76.3
A03p52790 Brassica napus HOM05D007380 ORTHO05D009269 7.3e-35 151.0 101 72.3
BraA03t14356Z Brassica rapa HOM05D007380 ORTHO05D009269 7.3e-35 151.0 101 72.3
Cc00_g03040 Coffea canephora HOM05D007380 ORTHO05D009269 7.3e-35 151.0 99 72.7
C01p15370 Brassica napus HOM05D007380 ORTHO05D009269 2.1e-34 149.4 98 73.5
CARHR228120 Cardamine hirsuta HOM05D007380 ORTHO05D009269 2.1e-34 149.4 95 75.8
Os04g0635700 Oryza sativa ssp. japonica HOM05D007380 ORTHO05D009269 2.8e-34 149.1 83 85.5
BolC1t01491H Brassica oleracea HOM05D007380 ORTHO05D009269 4.7e-34 148.3 98 72.4
BcaC09g51221 Brassica carinata HOM05D007380 ORTHO05D009269 1.4e-33 146.7 98 72.4
Eucgr.G00569 Eucalyptus grandis HOM05D007380 ORTHO05D009269 1.4e-33 146.7 79 86.1
Lsat_1_v5_gn_7_20660 Lactuca sativa HOM05D007380 ORTHO05D009269 1.8e-33 146.4 105 72.4
AL7G32620 Arabidopsis lyrata HOM05D007380 ORTHO05D009269 2.4e-33 146.0 98 71.4
Zm00001eb413340 Zea mays HOM05D007380 ORTHO05D009269 2.4e-33 146.0 79 86.1
AT4G21445 Arabidopsis thaliana HOM05D007380 ORTHO05D009269 3.1e-33 145.6 98 71.4
Thhalv10026468m.g Eutrema salsugineum HOM05D007380 ORTHO05D009269 3.1e-33 145.6 95 73.7
Lsat_1_v5_gn_9_39840 Lactuca sativa HOM05D007380 ORTHO05D009269 8.9e-33 144.1 107 69.2
THA.LOC104812675 Tarenaya hassleriana HOM05D007380 ORTHO05D009269 8.9e-33 144.1 99 70.7
Aa31LG6G3460 Aethionema arabicum HOM05D007380 ORTHO05D009269 2.0e-32 142.9 92 72.8
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-32 142.9 87 80.5
ATR0693G221 Amborella trichopoda HOM05D007380 ORTHO05D009269 5.8e-32 141.4 133 54.9
CDE04G1327 Ceratophyllum demersum HOM05D007380 ORTHO05D009269 9.9e-32 140.6 84 78.6
HanXRQChr05g0131131 Helianthus annuus HOM05D007380 ORTHO05D009269 1.7e-31 139.8 146 54.8
ECA236G0685 Erigeron canadensis HOM05D007380 ORTHO05D009269 2.9e-31 139.0 150 54.0
DCAR_024159 Daucus carota HOM05D007380 ORTHO05D009269 5.1e-28 128.3 69 84.1
SEGI_03473 Sequoiadendron giganteum HOM05D007380 ORTHO05D009269 1.5e-27 126.7 91 68.1
Pp3c5_24580 Physcomitrium patens HOM05D007380 ORTHO05D009269 4.3e-27 125.2 86 67.4
FvH4_3g03820 Fragaria vesca HOM05D007380 ORTHO05D009269 5.6e-27 124.8 75 81.3
Mapoly0097s0056 Marchantia polymorpha HOM05D007380 ORTHO05D009269 1.2e-26 123.6 83 67.5
Lj2P279T21 Lonicera japonica HOM05D007380 ORTHO05D009269 3.6e-26 122.1 66 84.8
AagrBONN_evm.TU.Sc2ySwM_228.835 Anthoceros agrestis HOM05D007380 ORTHO05D009269 4.4e-24 115.2 75 72.0
Nitab4.5_0001007g0090 Nicotiana tabacum HOM05D007380 ORTHO05D009269 5.8e-24 114.8 146 50.7
FAN11G1927 Fragaria x ananassa HOM05D007380 ORTHO05D009269 7.6e-24 114.4 55 96.4
CBR_g3310 Chara braunii HOM05D007380 ORTHO05D009269 9.9e-24 114.0 89 66.3
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 1.9e-22 109.8 143 48.3
SMO117G0257 Selaginella moellendorffii HOM05D007380 ORTHO05D009269 2.3e-20 102.8 78 62.8
PSO832G0352 Papaver somniferum HOM05D007380 ORTHO05D009269 6.6e-20 101.3 120 53.3
MD10G1304300 Malus domestica HOM05D007380 ORTHO05D009269 1.9e-19 99.8 76 69.7
BcaNung00854 Brassica carinata HOM05D007380 ORTHO05D009269 6.4e-07 58.2 47 53.2


User provided reference genes

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