Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.1e-80 303.1 147 100.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 5.1e-73 277.7 143 93.0
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 6.2e-71 270.8 143 90.9
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.5e-69 266.2 143 88.8
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 1.3e-63 246.5 143 83.9
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 2.6e-61 238.8 135 83.0
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 5.9e-61 237.7 135 82.2
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 3.8e-60 235.0 147 81.0
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.8e-57 226.1 135 80.0
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 7.7e-53 210.7 144 74.3
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 3.8e-52 208.4 139 74.1
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 3.8e-52 208.4 128 77.3
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 3.8e-52 208.4 144 72.9
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 8.5e-52 207.2 145 74.5
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 1.1e-51 206.8 135 75.6
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 1.9e-51 206.1 144 73.6
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 3.2e-51 205.3 144 71.5
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.2e-51 204.9 144 72.9
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 4.2e-51 204.9 144 72.9
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 1.6e-50 203.0 128 75.0
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.1e-50 202.6 144 73.6
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 2.1e-50 202.6 135 74.8
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 3.6e-50 201.8 144 71.5
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 1.0e-49 200.3 145 69.7
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.0e-49 200.3 129 74.4
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.4e-49 199.9 144 68.1
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.4e-49 199.9 144 68.1
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.8e-49 199.5 144 71.5
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.0e-49 198.7 144 72.9
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 5.1e-49 198.0 137 71.5
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 8.8e-49 197.2 112 83.0
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 8.8e-49 197.2 145 69.7
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 8.8e-49 197.2 145 69.7
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.1e-48 196.8 129 73.6
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.5e-48 196.4 145 69.7
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 5.7e-48 194.5 134 71.6
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.3e-47 193.4 146 67.1
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.3e-47 193.4 139 69.8
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 1.7e-47 193.0 144 68.1
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 2.2e-47 192.6 122 77.0
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.7e-47 191.8 143 69.9
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 4.8e-47 191.4 133 69.9
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 3.1e-46 188.7 143 67.1
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 2.0e-45 186.0 134 68.7
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 7.7e-45 184.1 143 63.6
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 7.7e-45 184.1 143 63.6
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 1.7e-44 183.0 145 66.9
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.2e-44 182.6 146 63.0
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.2e-44 182.6 146 63.0
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 5.0e-44 181.4 143 62.9
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 8.5e-44 180.6 145 67.6
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 1.1e-43 180.3 143 66.4
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 5.5e-43 177.9 122 70.5
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 3.6e-42 175.3 146 62.3
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.7e-42 174.9 146 63.0
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.4e-41 173.3 128 68.0
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 1.4e-41 173.3 129 65.9
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.4e-41 173.3 132 65.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.4e-41 173.3 132 65.9
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.4e-41 173.3 131 69.5
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 2.3e-41 172.6 112 74.1
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-40 170.2 136 64.0
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.5e-40 169.9 135 63.0
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.5e-40 169.9 137 65.7
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 4.4e-40 168.3 122 69.7
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 5.7e-40 167.9 146 63.0
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 1.3e-39 166.8 122 68.9
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.7e-39 165.2 147 59.9
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 2.4e-38 162.5 146 61.0
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 2.4e-38 162.5 149 61.7
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.4e-38 162.5 124 65.3
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 2.4e-38 162.5 122 69.7
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 3.1e-38 162.2 144 62.5
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 3.1e-38 162.2 122 67.2
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.1e-38 162.2 135 64.4
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 4.1e-38 161.8 147 59.2
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 5.3e-38 161.4 133 62.4
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 7.0e-38 161.0 133 62.4
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 7.0e-38 161.0 112 69.6
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 9.1e-38 160.6 113 71.7
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 4.5e-37 158.3 147 57.8
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 4.5e-37 158.3 141 62.4
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 5.9e-37 157.9 133 62.4
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.0e-36 157.1 140 61.4
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.0e-36 157.1 140 61.4
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 1.0e-36 157.1 147 60.5
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.9e-36 155.6 152 57.2
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.9e-36 155.6 152 57.2
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.9e-36 155.6 139 61.2
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 6.5e-36 154.5 122 63.1
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.1e-35 153.7 147 60.5
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 2.5e-35 152.5 143 54.5
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.2e-35 152.1 112 68.8
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 5.5e-35 151.4 141 61.0
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.1e-34 149.4 135 59.3
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 3.6e-34 148.7 136 61.0
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 4.7e-34 148.3 131 61.1
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 6.1e-34 147.9 135 58.5
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.0e-33 147.1 116 68.1
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.8e-33 146.4 141 59.6
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.2e-32 143.7 128 62.5
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 1.5e-32 143.3 120 59.2
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 2.6e-32 142.5 111 65.8
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 2.6e-32 142.5 117 62.4
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 2.2e-31 139.4 99 69.7
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 8.2e-31 137.5 147 57.1
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 1.1e-30 137.1 132 63.6
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.1e-30 137.1 133 57.9
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.5e-29 131.7 145 53.8
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.7e-28 129.8 129 57.4
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 8.5e-28 127.5 99 63.6
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 1.1e-27 127.1 100 65.0
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 3.2e-27 125.6 145 51.7
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 7.2e-27 124.4 126 57.9
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 2.1e-26 122.9 115 55.7
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 2.7e-26 122.5 136 51.5
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 6.8e-25 117.9 105 62.9
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 2.0e-24 116.3 136 51.5
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.1e-22 110.5 90 61.1
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 2.0e-21 106.3 100 60.0
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.3e-20 102.8 141 50.4
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 1.2e-18 97.1 107 54.2
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 3.6e-18 95.5 136 44.9
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 3.6e-18 95.5 108 52.8
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 9.8e-16 87.4 147 44.9
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 2.2e-15 86.3 145 45.5
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 9.2e-14 80.9 145 44.8
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.3e-12 77.0 110 45.5
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 1.1e-11 73.9 118 41.5


User provided reference genes

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