Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0004091 Rosa chinensis HOM05D002882 ORTHO05D003127 1.7e-35 152.1 78 100.0
TPR.G17098 Trifolium pratense HOM05D002882 ORTHO05D003127 2.0e-12 75.5 78 57.7
Prupe.1G224500 Prunus persica HOM05D002882 ORTHO05D003127 4.6e-12 74.3 78 56.4
Duzib268G0405 Durio zibethinus HOM05D002882 ORTHO05D003127 5.9e-12 73.9 78 56.4
Atru.chr12.733 Acer truncatum HOM05D002882 ORTHO05D003127 7.8e-12 73.6 78 56.4
Ciclev10033270m.g Citrus clementina HOM05D002882 ORTHO05D003127 7.8e-12 73.6 78 56.4
TWI75G1132 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 7.8e-12 73.6 78 56.4
Eucgr.B03504 Eucalyptus grandis HOM05D002882 ORTHO05D003127 1.0e-11 73.2 78 53.8
Lj4g0011609 Lotus japonicus HOM05D002882 ORTHO05D003127 1.0e-11 73.2 78 57.7
MD13G1120700 Malus domestica HOM05D002882 ORTHO05D003127 1.0e-11 73.2 78 55.1
Manes.13G010602 Manihot esculenta HOM05D002882 ORTHO05D003127 1.0e-11 73.2 78 56.4
Gohir.A03G125300 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.3e-11 72.8 78 56.4
Gohir.D02G148066 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.3e-11 72.8 78 56.4
THA.LOC104825496 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.3e-11 72.8 78 55.1
Aa31LG7G9870 Aethionema arabicum HOM05D002882 ORTHO05D003127 1.7e-11 72.4 77 55.8
CiPaw.06G103700 Carya illinoinensis HOM05D002882 ORTHO05D003127 1.7e-11 72.4 78 56.4
FvH4_4g23610 Fragaria vesca HOM05D002882 ORTHO05D003127 1.7e-11 72.4 78 55.1
TWI36G1708 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.7e-11 72.4 78 55.1
Phvul.L002646 Phaseolus vulgaris HOM05D002882 ORTHO05D003127 2.3e-11 72.0 78 57.7
RcHm_v2.0_Chr4g0430041 Rosa chinensis HOM05D002882 ORTHO05D003127 2.3e-11 72.0 78 53.8
Gorai.005G165800 Gossypium raimondii HOM05D002882 ORTHO05D003127 2.9e-11 71.6 74 58.1
THA.LOC104807127 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 2.9e-11 71.6 74 56.8
CANSAT01G2319 Cannabis sativa HOM05D002882 ORTHO05D003127 3.9e-11 71.2 78 53.8
Thecc.02G206200 Theobroma cacao HOM05D002882 ORTHO05D003127 3.9e-11 71.2 78 57.7
Duzib251G0063 Durio zibethinus HOM05D002882 ORTHO05D003127 5.0e-11 70.9 78 57.7
THA.LOC104807522 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 5.0e-11 70.9 78 53.8
Aa31LG4G12570 Aethionema arabicum HOM05D002882 ORTHO05D003127 6.6e-11 70.5 78 52.6
BcaC05g26741 Brassica carinata HOM05D002882 ORTHO05D003127 6.6e-11 70.5 78 52.6
Migut.K00953 Erythranthe guttata HOM05D002882 ORTHO05D003127 6.6e-11 70.5 78 55.1
Thhalv10009276m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 6.6e-11 70.5 78 53.8
Manes.12G009900 Manihot esculenta HOM05D002882 ORTHO05D003127 6.6e-11 70.5 78 55.1
BcaC01g01622 Brassica carinata HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
BcaC05g26548 Brassica carinata HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
A07p11910 Brassica napus HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
A09p38600 Brassica napus HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
C05p26050 Brassica napus HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
C07p17860 Brassica napus HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
BolC3t19658H Brassica oleracea HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
BolC5t31324H Brassica oleracea HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
BolC7t42292H Brassica oleracea HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
CiPaw.05G108400 Carya illinoinensis HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 55.1
Thhalv10009274m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 8.6e-11 70.1 78 52.6
QL03p052439 Quercus lobata HOM05D002882 ORTHO05D003127 8.6e-11 70.1 76 55.3
BcaB03g12073 Brassica carinata HOM05D002882 ORTHO05D003127 1.1e-10 69.7 76 52.6
Duzib248G1247 Durio zibethinus HOM05D002882 ORTHO05D003127 1.1e-10 69.7 78 55.1
Glyma.05G148000 Glycine max HOM05D002882 ORTHO05D003127 1.1e-10 69.7 78 53.8
THA.LOC109116983 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.1e-10 69.7 73 56.2
GSVIVG01010500001 Vitis vinifera HOM05D000160 ORTHO05D000496 1.1e-10 69.7 78 53.8
FAN05G1144 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.5e-10 69.3 77 54.5
PGR102G2921 Punica granatum HOM05D002882 ORTHO05D003127 1.5e-10 69.3 78 52.6
FAN03G2086 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.9e-10 68.9 77 54.5
FAN21G2692 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.9e-10 68.9 77 54.5
Gohir.D01G146600 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.9e-10 68.9 78 53.8
Gorai.002G182300 Gossypium raimondii HOM05D002882 ORTHO05D003127 1.9e-10 68.9 78 53.8
Solyc05g015530.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 1.9e-10 68.9 78 52.6
Sopen12g034980 Solanum pennellii HOM05D002882 ORTHO05D003127 1.9e-10 68.9 78 52.6
Eucgr.H04633 Eucalyptus grandis HOM05D002882 ORTHO05D003127 2.5e-10 68.6 78 55.1
BcaC05g26738 Brassica carinata HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
A08p26410 Brassica napus HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
A09p38620 Brassica napus HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
C03p73670 Brassica napus HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
C05p26030 Brassica napus HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
BolC5t31322H Brassica oleracea HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
BraA08t34592Z Brassica rapa HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
BraA09t39365Z Brassica rapa HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
BraA09t39367Z Brassica rapa HOM05D002882 ORTHO05D003127 3.3e-10 68.2 77 51.9
CSS0030072 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 3.3e-10 68.2 76 52.6
Lalb_Chr07g0187071 Lupinus albus HOM05D002882 ORTHO05D003127 3.3e-10 68.2 74 54.1
Nitab4.5_0002317g0010 Nicotiana tabacum HOM05D002882 ORTHO05D003127 3.3e-10 68.2 76 51.3
AL1G40730 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
AL1G40750 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
AT1G27330 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
AT1G27350 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
Carub.0001s2586 Capsella rubella HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
Carub.0001s2588 Capsella rubella HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
RcHm_v2.0_Chr5g0004081 Rosa chinensis HOM05D002882 ORTHO05D003127 4.3e-10 67.8 70 55.7
Sed0017260 Sechium edule HOM05D002882 ORTHO05D003127 4.3e-10 67.8 78 51.3
PGSC0003DMG402034311 Solanum tuberosum HOM05D002882 ORTHO05D003127 4.3e-10 67.8 74 54.1
Aqoxy5G03331 Aquilegia oxysepala HOM05D002882 ORTHO05D003127 5.6e-10 67.4 78 52.6
Lalb_Chr13g0294401 Lupinus albus HOM05D002882 ORTHO05D003127 5.6e-10 67.4 78 50.0
QL05p068309 Quercus lobata HOM05D002882 ORTHO05D003127 5.6e-10 67.4 76 51.3
Actinidia09644 Actinidia chinensis HOM05D002882 ORTHO05D003127 7.3e-10 67.0 78 51.3
Peaxi162Scf00518g00316 Petunia axillaris HOM05D002882 ORTHO05D003127 7.3e-10 67.0 77 51.9
CSS0003576 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 9.5e-10 66.6 78 52.6
Lalb_Chr12g0206061 Lupinus albus HOM05D002882 ORTHO05D003127 9.5e-10 66.6 78 50.0
Nn3g16443 Nelumbo nucifera HOM05D002882 ORTHO05D003127 9.5e-10 66.6 78 50.0
arahy.Tifrunner.gnm1.ann1.CG2Z4D Arachis hypogaea HOM05D002882 ORTHO05D003127 1.2e-09 66.2 77 51.9
arahy.Tifrunner.gnm1.ann1.ZB5YIW Arachis hypogaea HOM05D002882 ORTHO05D003127 1.2e-09 66.2 77 51.9
CSS0027104 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 1.2e-09 66.2 75 52.0
Oeu004455.1 Olea europaea HOM05D002882 ORTHO05D003127 1.2e-09 66.2 78 51.3
PSO017G4765 Papaver somniferum HOM05D002882 ORTHO05D003127 1.2e-09 66.2 78 50.0
PSO478G1706 Papaver somniferum HOM05D002882 ORTHO05D003127 1.2e-09 66.2 78 50.0
PGR004G1099 Punica granatum HOM05D002882 ORTHO05D003127 1.2e-09 66.2 78 50.0
CANSAT56G1012 Cannabis sativa HOM05D002882 ORTHO05D003127 1.6e-09 65.9 78 50.0
CARHR026930 Cardamine hirsuta HOM05D002882 ORTHO05D003127 1.6e-09 65.9 77 50.6
MBI19_g07167_MAGBIO Magnolia biondii HOM05D002882 ORTHO05D003127 1.6e-09 65.9 78 48.7
Sed0006820 Sechium edule HOM05D002882 ORTHO05D003127 1.6e-09 65.9 78 50.0
CiPaw.09G105800 Carya illinoinensis HOM05D002882 ORTHO05D003127 2.1e-09 65.5 78 50.0
CsaV3_4G002750 Cucumis sativus L. HOM05D002882 ORTHO05D003127 2.1e-09 65.5 76 50.0
DCAR_016387 Daucus carota HOM05D002882 ORTHO05D003127 2.1e-09 65.5 78 51.3
Dinv11180 Davidia involucrata HOM05D002882 ORTHO05D003127 2.1e-09 65.5 78 51.3
Hma1.2p1_0065F.1_g035360 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 2.1e-09 65.5 75 52.0
Nn1g07474 Nelumbo nucifera HOM05D002882 ORTHO05D003127 2.1e-09 65.5 78 50.0
Sabra01G0041500 Salix brachista HOM05D002882 ORTHO05D003127 2.1e-09 65.5 78 50.0
Actinidia08876 Actinidia chinensis HOM05D002882 ORTHO05D003127 2.8e-09 65.1 78 52.6
COL.COLO4_20417 Corchorus olitorius HOM05D002882 ORTHO05D003127 2.8e-09 65.1 77 51.9
PGR119G2350 Punica granatum HOM05D002882 ORTHO05D003127 2.8e-09 65.1 78 52.6
SalBow8G0743 Salvia bowleyana HOM05D002882 ORTHO05D003127 2.8e-09 65.1 77 51.9
Sed0013705 Sechium edule HOM05D002882 ORTHO05D003127 2.8e-09 65.1 78 50.0
C07p17880 Brassica napus HOM05D002882 ORTHO05D003127 3.6e-09 64.7 77 49.4
FAN27G2176 Fragaria x ananassa HOM05D002882 ORTHO05D003127 3.6e-09 64.7 77 51.9
Os11g0637501 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 3.6e-09 64.7 78 52.6
Actinidia20716 Actinidia chinensis HOM05D002882 ORTHO05D003127 4.7e-09 64.3 78 50.0
Actinidia36810 Actinidia chinensis HOM05D002882 ORTHO05D003127 4.7e-09 64.3 78 51.3
Cc11_g17020 Coffea canephora HOM05D002882 ORTHO05D003127 4.7e-09 64.3 77 49.4
Rhsim12G0092300 Rhododendron simsii HOM05D002882 ORTHO05D003127 4.7e-09 64.3 78 48.7
Zm00001eb166200 Zea mays HOM05D002882 ORTHO05D003127 4.7e-09 64.3 78 48.7
Dinv17570 Davidia involucrata HOM05D002882 ORTHO05D003127 6.2e-09 63.9 78 52.6
Dinv23154 Davidia involucrata HOM05D002882 ORTHO05D003127 6.2e-09 63.9 78 51.3
Potri.006G017100 Populus trichocarpa HOM05D002882 ORTHO05D003127 6.2e-09 63.9 78 48.7
HPP92_007896 Vanilla planifolia HOM05D002882 ORTHO05D003127 6.2e-09 63.9 78 47.4
Zm00001eb115230 Zea mays HOM05D002882 ORTHO05D003127 6.2e-09 63.9 78 52.6
EL10Ac6g13517 Beta vulgaris HOM05D002882 ORTHO05D003127 8.0e-09 63.5 76 50.0
CDE07G2053 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 8.0e-09 63.5 78 48.7
Gohir.D12G153000 Gossypium hirsutum HOM05D002882 ORTHO05D003127 8.0e-09 63.5 78 50.0
Gorai.008G165500 Gossypium raimondii HOM05D002882 ORTHO05D003127 8.0e-09 63.5 78 50.0
Os12g0514100 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 8.0e-09 63.5 78 50.0
SalBow2G3348 Salvia bowleyana HOM05D002882 ORTHO05D003127 8.0e-09 63.5 77 51.9
Hund06096 Selenicereus undatus HOM05D002882 ORTHO05D003127 8.0e-09 63.5 77 49.4
Sc11g0000410 Simmondsia chinensis HOM05D002882 ORTHO05D003127 8.0e-09 63.5 78 48.7
CDE04G3034 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 1.0e-08 63.2 78 47.4
Potri.001G057300 Populus trichocarpa HOM05D002882 ORTHO05D003127 1.0e-08 63.2 78 51.3
Potri.003G171100 Populus trichocarpa HOM05D002882 ORTHO05D003127 1.0e-08 63.2 78 51.3
Sc04g0010210 Simmondsia chinensis HOM05D002882 ORTHO05D003127 1.0e-08 63.2 78 47.4
vmacro16103 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 1.0e-08 63.2 77 49.4
CsaV3_6G007080 Cucumis sativus L. HOM05D002882 ORTHO05D003127 1.4e-08 62.8 78 50.0
Gohir.A01G154400 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.4e-08 62.8 78 52.6
Lsat_1_v5_gn_4_541 Lactuca sativa HOM05D002882 ORTHO05D003127 1.4e-08 62.8 77 50.6
PSO541G3989 Papaver somniferum HOM05D002882 ORTHO05D003127 1.4e-08 62.8 78 47.4
PSO675G6750 Papaver somniferum HOM05D002882 ORTHO05D003127 1.4e-08 62.8 78 47.4
Zm00001eb264480 Zea mays HOM05D002882 ORTHO05D003127 1.4e-08 62.8 78 50.0
HanXRQChr08g0236801 Helianthus annuus HOM05D002882 ORTHO05D003127 1.8e-08 62.4 78 51.3
Hma1.2p1_0014F.1_g009350 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 1.8e-08 62.4 75 49.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.8e-08 62.4 77 48.1
TAR627G0864 Trochodendron aralioides HOM05D002882 ORTHO05D003127 1.8e-08 62.4 77 48.1
ECA246G4694 Erigeron canadensis HOM05D002882 ORTHO05D003127 2.3e-08 62.0 78 48.7
Gohir.A12G149100 Gossypium hirsutum HOM05D002882 ORTHO05D003127 2.3e-08 62.0 78 48.7
Lsat_1_v5_gn_5_12541 Lactuca sativa HOM05D002882 ORTHO05D003127 2.3e-08 62.0 77 50.6
Oeu035471.1 Olea europaea HOM05D002882 ORTHO05D003127 2.3e-08 62.0 78 50.0
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 3.1e-08 61.6 77 50.6
ECA232G0131 Erigeron canadensis HOM05D002882 ORTHO05D003127 4.0e-08 61.2 78 50.0
Potri.001G057150 Populus trichocarpa HOM05D002882 ORTHO05D003127 4.0e-08 61.2 73 53.4
FAN06G3629 Fragaria x ananassa HOM05D002882 ORTHO05D003127 6.8e-08 60.5 69 53.6
Ciclev10017411m.g Citrus clementina HOM05D002882 ORTHO05D003127 8.9e-08 60.1 78 47.4
Lsat_1_v5_gn_3_30780 Lactuca sativa HOM05D002882 ORTHO05D003127 8.9e-08 60.1 76 47.4
Actinidia25567 Actinidia chinensis HOM05D002882 ORTHO05D003127 1.2e-07 59.7 78 47.4
TWI38G0237 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.2e-07 59.7 78 46.2
HanXRQChr09g0273281 Helianthus annuus HOM05D002882 ORTHO05D003127 1.5e-07 59.3 78 47.4
Oeu005006.1 Olea europaea HOM05D002882 ORTHO05D003127 2.0e-07 58.9 78 51.3
Dinv04408 Davidia involucrata HOM05D002882 ORTHO05D003127 5.8e-07 57.4 78 43.6
Mapoly0043s0038 Marchantia polymorpha HOM05D002882 ORTHO05D003127 5.8e-07 57.4 78 47.4
A07p11940 Brassica napus HOM05D002882 ORTHO05D003127 7.5e-07 57.0 67 47.8
BraA07t28979Z Brassica rapa HOM05D002882 ORTHO05D003127 7.5e-07 57.0 67 47.8
FAN07G1498 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.7e-06 55.8 62 54.8
FAN12G2377 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.7e-06 55.8 62 54.8
FAN17G2810 Fragaria x ananassa HOM05D002882 ORTHO05D003127 1.7e-06 55.8 62 54.8
Psat7g077120 Pisum sativum HOM05D002882 ORTHO05D003127 2.2e-06 55.5 62 56.5
Zm00001eb107890 Zea mays HOM05D002882 ORTHO05D003127 2.2e-06 55.5 76 43.4
Gohir.A06G155400 Gossypium hirsutum HOM05D002882 ORTHO05D003127 3.7e-06 54.7 78 44.9
Os07g0583000 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 3.7e-06 54.7 71 47.9
SMO353G0023 Selaginella moellendorffii HOM05D002882 ORTHO05D003127 4.9e-06 54.3 74 43.2
Haze_12432 Corylus avellana HOM05D002882 ORTHO05D003127 8.3e-06 53.5 61 54.1
Zm00001eb325710 Zea mays HOM05D002882 ORTHO05D003127 8.3e-06 53.5 76 40.8


User provided reference genes

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