Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 2.1e-54 215.3 100 100.0
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 1.1e-53 213.0 100 98.0
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 7.0e-50 200.3 100 94.0
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 1.6e-49 199.1 100 93.0
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 2.7e-49 198.4 100 92.0
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 2.7e-49 198.4 100 92.0
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 3.5e-49 198.0 100 91.0
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 3.5e-49 198.0 100 92.0
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 3.5e-49 198.0 100 92.0
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 3.5e-49 198.0 100 92.0
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 4.6e-49 197.6 100 92.0
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 4.6e-49 197.6 100 92.0
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 4.6e-49 197.6 100 92.0
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 4.6e-49 197.6 100 92.0
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 1.3e-48 196.1 100 92.0
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.7e-48 195.7 100 92.0
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 1.7e-48 195.7 100 91.0
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 1.7e-48 195.7 100 92.0
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 1.7e-48 195.7 100 92.0
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 1.7e-48 195.7 100 90.0
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 2.3e-48 195.3 100 92.0
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 2.3e-48 195.3 100 91.0
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 3.9e-48 194.5 100 91.0
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 5.1e-48 194.1 100 91.0
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 5.1e-48 194.1 100 91.0
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 5.1e-48 194.1 100 91.0
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 6.6e-48 193.7 100 90.0
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 6.6e-48 193.7 100 91.0
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 6.6e-48 193.7 100 91.0
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 1.1e-47 193.0 101 89.1
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.1e-47 193.0 100 89.0
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.1e-47 193.0 100 89.0
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 1.1e-47 193.0 100 89.0
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 1.5e-47 192.6 100 89.0
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 1.5e-47 192.6 100 89.0
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 1.5e-47 192.6 100 89.0
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 1.5e-47 192.6 100 90.0
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 1.5e-47 192.6 98 90.8
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 1.5e-47 192.6 100 89.0
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 1.9e-47 192.2 100 89.0
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 2.5e-47 191.8 100 90.0
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 2.5e-47 191.8 100 90.0
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 2.5e-47 191.8 99 90.9
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 2.5e-47 191.8 100 89.0
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 3.3e-47 191.4 100 88.0
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 3.3e-47 191.4 100 90.0
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 4.3e-47 191.0 100 88.0
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 4.3e-47 191.0 100 88.0
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 4.3e-47 191.0 100 89.0
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 4.3e-47 191.0 100 89.0
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 5.6e-47 190.7 100 88.0
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 5.6e-47 190.7 100 88.0
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 5.6e-47 190.7 100 89.0
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 5.6e-47 190.7 100 87.0
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 7.3e-47 190.3 100 87.0
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 7.3e-47 190.3 100 87.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 7.3e-47 190.3 100 87.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 7.3e-47 190.3 100 87.0
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 7.3e-47 190.3 100 89.0
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 9.5e-47 189.9 100 87.0
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 9.5e-47 189.9 100 90.0
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 9.5e-47 189.9 100 88.0
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 9.5e-47 189.9 100 88.0
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 1.2e-46 189.5 100 86.0
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 1.2e-46 189.5 100 87.0
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.2e-46 189.5 100 87.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.2e-46 189.5 100 87.0
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 1.6e-46 189.1 100 87.0
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 1.6e-46 189.1 100 90.0
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 1.6e-46 189.1 100 87.0
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 1.6e-46 189.1 100 90.0
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 1.6e-46 189.1 100 86.0
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 2.1e-46 188.7 100 87.0
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 2.1e-46 188.7 100 87.0
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 2.1e-46 188.7 100 89.0
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 2.8e-46 188.3 100 89.0
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 2.8e-46 188.3 100 88.0
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 3.6e-46 188.0 100 88.0
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 3.6e-46 188.0 100 87.0
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 6.2e-46 187.2 111 82.9
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 6.2e-46 187.2 100 86.0
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 1.8e-45 185.7 100 88.0
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 2.3e-45 185.3 100 87.0
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 2.6e-44 181.8 104 85.6
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 2.6e-44 181.8 100 84.0
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 1.7e-43 179.1 94 88.3
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 2.2e-43 178.7 126 71.4
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 2.4e-42 175.3 98 83.7
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 7.1e-42 173.7 94 87.2
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 1.2e-41 172.9 100 79.0
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 2.1e-41 172.2 94 85.1
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 2.1e-38 162.2 84 89.3
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 8.1e-38 160.2 102 80.4
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 1.8e-37 159.1 93 76.3
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 2.0e-36 155.6 96 74.0
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 3.4e-36 154.8 84 85.7
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 3.5e-33 144.8 78 85.9
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 1.2e-28 129.8 95 60.0
Cre16.g670200 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 3.5e-25 118.2 98 55.1
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 2.3e-24 115.5 65 84.6
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 9.3e-18 93.6 45 100.0
A01p30660 Brassica napus HOM05D006758 ORTHO05D008326 2.7e-17 92.0 43 90.7
Cre16.g689376 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 4.6e-17 91.3 80 52.5
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 4.6e-17 91.3 46 93.5
A01p30680 Brassica napus HOM05D006758 ORTHO05D008326 1.0e-16 90.1 43 88.4
BraA01t03197Z Brassica rapa HOM05D006758 ORTHO05D008326 1.0e-16 90.1 43 88.4
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 1.8e-16 89.4 55 83.6
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 1.8e-16 89.4 44 95.5
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 2.3e-16 89.0 43 97.7
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 2.3e-16 89.0 46 91.3
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 2.3e-16 89.0 46 91.3
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 3.0e-16 88.6 43 97.7
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 5.1e-16 87.8 45 93.3
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.9e-15 85.9 45 91.1
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 8.1e-14 80.5 40 90.0
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 3.1e-13 78.6 39 97.4
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 2.6e-12 75.5 54 66.7
MBI15_g03894_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 3.8e-11 71.6 54 63.0
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 4.2e-10 68.2 32 93.8


User provided reference genes

Program Settings