Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003611 Rosa chinensis HOM05D026894 ORTHO05D029641 1.6e-198 696.0 379 100.0
FvH4_3g02400 Fragaria vesca HOM05D026894 ORTHO05D029641 5.6e-55 219.2 396 38.6
FAN21G1954 Fragaria x ananassa HOM05D026894 ORTHO05D029641 5.2e-45 186.0 359 36.8
RcHm_v2.0_Chr5g0003631 Rosa chinensis HOM05D026894 ORTHO05D029641 2.8e-30 137.1 141 56.0
Prupe.8G116100 Prunus persica HOM05D000827 ORTHO05D001576 1.2e-17 95.1 179 42.5
Dinv39894 Davidia involucrata HOM05D000827 ORTHO05D001576 1.5e-15 88.2 171 38.0
Atru.chr5.2817 Acer truncatum HOM05D000827 ORTHO05D001576 7.3e-15 85.9 169 39.1
Hma1.2p1_0873F.1_g231240 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 2.1e-14 84.3 174 37.4
Nitab4.5_0003726g0090 Nicotiana tabacum HOM05D000827 ORTHO05D001576 2.1e-14 84.3 157 42.7
Cpa.g.sc62.52 Carica papaya HOM05D000827 ORTHO05D001576 2.8e-14 84.0 189 36.5
MD10G1089200 Malus domestica HOM05D000827 ORTHO05D001576 4.8e-14 83.2 183 38.3
BcaC05g28535 Brassica carinata HOM05D000827 ORTHO05D001576 1.4e-13 81.6 165 37.0
C05p46160 Brassica napus HOM05D000827 ORTHO05D001576 1.4e-13 81.6 165 37.0
COL.COLO4_11723 Corchorus olitorius HOM05D000827 ORTHO05D001576 1.4e-13 81.6 136 43.4
Aa31LG10G4470 Aethionema arabicum HOM05D000827 ORTHO05D001576 2.4e-13 80.9 166 38.6
Sed0023407 Sechium edule HOM05D000827 ORTHO05D001576 2.4e-13 80.9 174 39.1
BcaB06g25962 Brassica carinata HOM05D000827 ORTHO05D001576 3.1e-13 80.5 164 36.6
CAN.G322.36 Capsicum annuum HOM05D000827 ORTHO05D001576 5.3e-13 79.7 185 38.4
AT1G49520 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 1.2e-12 78.6 167 37.1
BolC5t33344H Brassica oleracea HOM05D000827 ORTHO05D001576 2.0e-12 77.8 180 34.4
unitig_736.g22655 Utricularia gibba HOM05D000827 ORTHO05D001576 2.0e-12 77.8 176 35.8
AUR62016635 Chenopodium quinoa HOM05D000827 ORTHO05D001576 3.4e-12 77.0 170 38.2
A05p30540 Brassica napus HOM05D000827 ORTHO05D001576 4.5e-12 76.6 164 35.4
BraA05t21892Z Brassica rapa HOM05D000827 ORTHO05D001576 4.5e-12 76.6 180 33.9
Thecc.02G095500 Theobroma cacao HOM05D000827 ORTHO05D001576 4.5e-12 76.6 176 35.8
Haze_15446 Corylus avellana HOM05D000827 ORTHO05D001576 5.8e-12 76.3 191 34.0
CsaV3_2G017470 Cucumis sativus L. HOM05D000827 ORTHO05D001576 5.8e-12 76.3 183 35.0
QL11p038399 Quercus lobata HOM05D000827 ORTHO05D001576 7.6e-12 75.9 192 32.8
ClCG02G013290 Citrullus lanatus HOM05D000827 ORTHO05D001576 9.9e-12 75.5 189 33.3
Thhalv10020944m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 9.9e-12 75.5 185 34.1
Manes.15G143600 Manihot esculenta HOM05D000827 ORTHO05D001576 9.9e-12 75.5 193 36.3
Nn6g32082 Nelumbo nucifera HOM05D000827 ORTHO05D001576 9.9e-12 75.5 197 33.5
CANSAT25G2754 Cannabis sativa HOM05D000827 ORTHO05D001576 1.3e-11 75.1 188 33.0
Carub.0001s3871 Capsella rubella HOM05D000827 ORTHO05D001576 1.3e-11 75.1 171 36.3
Ciclev10028659m.g Citrus clementina HOM05D000827 ORTHO05D001576 1.3e-11 75.1 189 34.9
Sabra04G0096200 Salix brachista HOM05D000827 ORTHO05D001576 1.3e-11 75.1 183 36.6
Lsat_1_v5_gn_3_92820 Lactuca sativa HOM05D000827 ORTHO05D001576 1.7e-11 74.7 176 33.0
Sc14g0001700 Simmondsia chinensis HOM05D000827 ORTHO05D001576 1.7e-11 74.7 186 33.9
CAN.G179.44 Capsicum annuum HOM05D000827 ORTHO05D001576 2.2e-11 74.3 178 37.1
CiPaw.02G010400 Carya illinoinensis HOM05D000827 ORTHO05D001576 2.2e-11 74.3 196 31.6
Potri.005G134500 Populus trichocarpa HOM05D000827 ORTHO05D001576 2.2e-11 74.3 183 33.3
Sabra09G0081500 Salix brachista HOM05D000827 ORTHO05D001576 2.2e-11 74.3 182 36.8
Sp1g36380 Schrenkiella parvula HOM05D000827 ORTHO05D001576 2.9e-11 73.9 168 36.9
CiPaw.01G023400 Carya illinoinensis HOM05D000827 ORTHO05D001576 3.8e-11 73.6 193 34.2
Lsat_1_v5_gn_5_113480 Lactuca sativa HOM05D000827 ORTHO05D001576 3.8e-11 73.6 181 33.1
Nitab4.5_0002462g0060 Nicotiana tabacum HOM05D000827 ORTHO05D001576 3.8e-11 73.6 187 35.8
Potri.009G106700 Populus trichocarpa HOM05D000827 ORTHO05D001576 3.8e-11 73.6 182 35.2
Sp3g17160 Schrenkiella parvula HOM05D000827 ORTHO05D001576 3.8e-11 73.6 185 32.4
THA.LOC104811358 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 3.8e-11 73.6 184 34.8
CARHR039550 Cardamine hirsuta HOM05D000827 ORTHO05D001576 4.9e-11 73.2 169 37.3
Thhalv10011568m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 4.9e-11 73.2 169 37.3
Gohir.A03G191000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 4.9e-11 73.2 180 34.4
HanXRQChr15g0473831 Helianthus annuus HOM05D000827 ORTHO05D001576 4.9e-11 73.2 173 33.5
Nn5g29347 Nelumbo nucifera HOM05D000827 ORTHO05D001576 4.9e-11 73.2 189 34.9
Cfa003974 Carpinus fangiana HOM05D000827 ORTHO05D001576 6.4e-11 72.8 185 32.4
MELO3C020943.2 Cucumis melo HOM05D000827 ORTHO05D001576 6.4e-11 72.8 183 34.4
Zm00001eb058450 Zea mays HOM05D000827 ORTHO05D001576 6.4e-11 72.8 199 31.2
ATR0767G010 Amborella trichopoda HOM05D000827 ORTHO05D001576 8.4e-11 72.4 173 34.7
Lalb_Chr05g0213161 Lupinus albus HOM05D000827 ORTHO05D001576 8.4e-11 72.4 190 31.6
Zm00001eb214210 Zea mays HOM05D000827 ORTHO05D001576 8.4e-11 72.4 197 31.0
PGR142G2446 Punica granatum HOM05D000827 ORTHO05D001576 1.1e-10 72.0 188 35.1
Rhsim08G0104200 Rhododendron simsii HOM05D000827 ORTHO05D001576 1.1e-10 72.0 195 30.8
Solyc01g108290.3 Solanum lycopersicum HOM05D000827 ORTHO05D001576 1.4e-10 71.6 198 33.8
HPP92_018724 Vanilla planifolia HOM05D000827 ORTHO05D001576 1.4e-10 71.6 199 34.2
Gohir.D02G212000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.9e-10 71.2 180 31.7
Gorai.005G239900 Gossypium raimondii HOM05D000827 ORTHO05D001576 1.9e-10 71.2 180 31.7
Phvul.002G021500 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 1.9e-10 71.2 204 29.9
TWI09G1604 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 1.9e-10 71.2 205 31.2
VMungo1215G2818 Vigna mungo HOM05D000827 ORTHO05D001576 1.9e-10 71.2 207 30.9
Cc07_g05720 Coffea canephora HOM05D000827 ORTHO05D001576 2.4e-10 70.9 190 31.6
Potri.004G145200 Populus trichocarpa HOM05D000827 ORTHO05D001576 2.4e-10 70.9 183 37.2
RcHm_v2.0_Chr6g0259201 Rosa chinensis HOM05D000827 ORTHO05D001576 3.2e-10 70.5 193 33.2
PGSC0003DMG400025800 Solanum tuberosum HOM05D000827 ORTHO05D001576 3.2e-10 70.5 201 33.3
HanXRQChr10g0303211 Helianthus annuus HOM05D000827 ORTHO05D001576 4.2e-10 70.1 190 32.1
Sopen01g050510 Solanum pennellii HOM05D000827 ORTHO05D001576 4.2e-10 70.1 198 33.8
vmacro17920 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 4.2e-10 70.1 199 29.6
AL1G56870 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 5.4e-10 69.7 171 34.5
FAN20G0485 Fragaria x ananassa HOM05D000827 ORTHO05D001576 5.4e-10 69.7 194 34.0
Peaxi162Scf00016g10154 Petunia axillaris HOM05D000827 ORTHO05D001576 5.4e-10 69.7 186 34.9
Hund06188 Selenicereus undatus HOM05D000827 ORTHO05D001576 5.4e-10 69.7 202 32.2
Thecc.01G050600 Theobroma cacao HOM05D000827 ORTHO05D001576 5.4e-10 69.7 193 33.2
Carub.0003s1892 Capsella rubella HOM05D000827 ORTHO05D001576 7.1e-10 69.3 177 34.5
Migut.H00467 Erythranthe guttata HOM05D000827 ORTHO05D001576 7.1e-10 69.3 191 30.4
Glyma.01G183600 Glycine max HOM05D000827 ORTHO05D001576 7.1e-10 69.3 201 30.3
Medtr5g018010 Medicago truncatula HOM05D000827 ORTHO05D001576 7.1e-10 69.3 197 29.4
PSO675G0901 Papaver somniferum HOM05D000827 ORTHO05D001576 7.1e-10 69.3 181 32.0
FvH4_2g06890 Fragaria vesca HOM05D000827 ORTHO05D001576 1.2e-09 68.6 192 33.3
Glyma.11G058700 Glycine max HOM05D000827 ORTHO05D001576 1.2e-09 68.6 73 52.1
Lj2g0019864 Lotus japonicus HOM05D000827 ORTHO05D001576 1.2e-09 68.6 200 30.0
QL06p042760 Quercus lobata HOM05D000827 ORTHO05D001576 1.2e-09 68.6 189 33.3
Atru.chr3.426 Acer truncatum HOM05D000827 ORTHO05D001576 2.1e-09 67.8 191 31.4
MSTRG.23778 Avicennia marina HOM05D000827 ORTHO05D001576 2.1e-09 67.8 185 30.8
CSS0024154 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 2.1e-09 67.8 191 33.5
CSS0046507 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 2.1e-09 67.8 191 33.5
Dinv29954 Davidia involucrata HOM05D000827 ORTHO05D001576 2.1e-09 67.8 208 30.8
ECA234G2777 Erigeron canadensis HOM05D000827 ORTHO05D001576 2.1e-09 67.8 181 34.3
Psat2g164800 Pisum sativum HOM05D000827 ORTHO05D001576 2.1e-09 67.8 217 30.0
PSO541G1265 Papaver somniferum HOM05D000827 ORTHO05D001576 2.7e-09 67.4 184 31.5
TPR.G11363 Trifolium pratense HOM05D000827 ORTHO05D001576 2.7e-09 67.4 205 28.8
EL10Ac9g21819 Beta vulgaris HOM05D000827 ORTHO05D001576 3.5e-09 67.0 184 33.7
FAN15G1827 Fragaria x ananassa HOM05D000827 ORTHO05D001576 3.5e-09 67.0 194 33.0
FAN24G0901 Fragaria x ananassa HOM05D000827 ORTHO05D001576 3.5e-09 67.0 192 32.8
SGA_v2.0_scaffold58G20605 Striga asiatica HOM05D000827 ORTHO05D001576 3.5e-09 67.0 202 30.7
ECA232G2430 Erigeron canadensis HOM05D000827 ORTHO05D001576 4.6e-09 66.6 187 33.2
Eucgr.I01179 Eucalyptus grandis HOM05D000827 ORTHO05D001576 4.6e-09 66.6 191 31.4
CANSAT01G2960 Cannabis sativa HOM05D000827 ORTHO05D001576 6.0e-09 66.2 196 32.7
Ciclev10026010m.g Citrus clementina HOM05D000827 ORTHO05D001576 6.0e-09 66.2 205 30.7
Gohir.A11G189600 Gossypium hirsutum HOM05D000827 ORTHO05D001576 6.0e-09 66.2 183 32.8
SGA_v2.0_scaffold15G07245 Striga asiatica HOM05D000827 ORTHO05D001576 6.0e-09 66.2 198 29.3
TAR376G0084 Trochodendron aralioides HOM05D000827 ORTHO05D001576 6.0e-09 66.2 198 29.8
Ca_24794_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001576 7.9e-09 65.9 73 49.3
Rhsim05G0080300 Rhododendron simsii HOM05D000827 ORTHO05D001576 7.9e-09 65.9 194 30.9
FAN27G2733 Fragaria x ananassa HOM05D000827 ORTHO05D001576 1.0e-08 65.5 194 32.5
Duzib147G1103 Durio zibethinus HOM05D000827 ORTHO05D001576 1.3e-08 65.1 188 33.0
HanXRQChr12g0378341 Helianthus annuus HOM05D000827 ORTHO05D001576 1.3e-08 65.1 178 30.9
arahy.Tifrunner.gnm1.ann1.CVNS8P Arachis hypogaea HOM05D000827 ORTHO05D001576 1.8e-08 64.7 209 28.7
COL.COLO4_11352 Corchorus olitorius HOM05D000827 ORTHO05D001576 1.8e-08 64.7 197 29.4
AT3G19080 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 3.0e-08 63.9 181 33.7
Oeu003944.1 Olea europaea HOM05D000827 ORTHO05D001576 3.0e-08 63.9 190 30.0
TPR.G18338 Trifolium pratense HOM05D000827 ORTHO05D001576 3.0e-08 63.9 73 49.3
CARHR094500 Cardamine hirsuta HOM05D000827 ORTHO05D001576 3.9e-08 63.5 179 33.5
AUR62011425 Chenopodium quinoa HOM05D000827 ORTHO05D001576 3.9e-08 63.5 88 46.6
Dinv30830 Davidia involucrata HOM05D000827 ORTHO05D001576 3.9e-08 63.5 73 47.9
Duzib132G0316 Durio zibethinus HOM05D000827 ORTHO05D001576 6.7e-08 62.8 73 47.9
Duzib264G0886 Durio zibethinus HOM05D000827 ORTHO05D001576 6.7e-08 62.8 194 31.4
MBI16_g19912_MAGBIO Magnolia biondii HOM05D000827 ORTHO05D001576 8.7e-08 62.4 87 44.8
Nitab4.5_0000806g0120 Nicotiana tabacum HOM05D000827 ORTHO05D001576 8.7e-08 62.4 199 29.1
GSVIVG01003552001 Vitis vinifera HOM05D000827 ORTHO05D001576 8.7e-08 62.4 198 29.3
Gorai.007G210300 Gossypium raimondii HOM05D000827 ORTHO05D001576 1.5e-07 61.6 189 31.2
Atru.chr2.2347 Acer truncatum HOM05D011555 ORTHO05D013920 1.9e-07 61.2 114 33.3
AL3G32450 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 2.5e-07 60.8 181 33.1
Actinidia12228 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.3e-07 60.5 202 28.7
Cc02_g18450 Coffea canephora HOM05D000827 ORTHO05D001576 3.3e-07 60.5 71 47.9
CSS0009817 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 5.6e-07 59.7 73 46.6
Os03g0764450 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001576 5.6e-07 59.7 73 45.2
CAN.G470.12 Capsicum annuum HOM05D000827 ORTHO05D001576 7.4e-07 59.3 202 28.7
Oeu013673.1 Olea europaea HOM05D000827 ORTHO05D001576 7.4e-07 59.3 80 46.2
SHI05501 Sapria himalayana HOM05D000827 ORTHO05D001576 9.6e-07 58.9 88 45.5
Sopen02g015290 Solanum pennellii HOM05D000827 ORTHO05D001576 1.3e-06 58.5 182 31.3
Lj4C138G6 Lonicera japonica HOM05D000827 ORTHO05D001576 1.6e-06 58.2 140 33.6
Aqoxy6G00892 Aquilegia oxysepala HOM05D000827 ORTHO05D001576 2.1e-06 57.8 200 31.0
Actinidia30858 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.7e-06 57.0 73 45.2
Migut.B00307 Erythranthe guttata HOM05D000827 ORTHO05D001576 3.7e-06 57.0 194 28.9
Sc16g0001590 Simmondsia chinensis HOM05D000827 ORTHO05D001576 3.7e-06 57.0 167 29.3
TAR628G1648 Trochodendron aralioides HOM05D000827 ORTHO05D001576 4.8e-06 56.6 71 47.9


User provided reference genes

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