Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 2534.6 1401 100.0
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1939.1 1493 75.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1788.9 1443 72.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1738.8 1557 67.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1616.7 1486 63.5
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1566.6 1536 61.6
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1443.7 1496 55.2
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1357.0 1490 55.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1347.0 1592 50.7
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1322.8 1395 57.8
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1314.7 1574 50.4
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1305.8 1516 54.9
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1303.5 1508 52.7
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1300.8 1531 54.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1293.1 1537 53.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1292.7 1544 54.3
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1281.5 1487 52.8
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1273.1 1467 55.0
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1270.8 1490 50.4
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1266.5 1516 52.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1264.6 1580 53.9
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1261.1 1476 54.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1251.1 1475 49.8
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1241.9 1516 52.0
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1241.5 1484 53.5
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1240.7 1562 51.2
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1229.5 1482 52.9
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1224.2 1446 52.8
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1219.9 1497 52.0
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1212.2 1507 52.1
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1545 48.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1206.0 1456 50.8
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1199.9 1578 47.0
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1198.3 1776 48.1
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1189.1 1506 51.3
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1187.2 1495 51.6
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1176.0 1472 50.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1171.8 1470 48.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1166.8 1494 51.2
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1160.6 1585 49.6
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1157.5 1605 48.8
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1152.1 1489 50.5
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1134.0 1439 50.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1131.3 1495 50.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1131.3 1558 48.7
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1127.1 1451 49.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1123.2 1418 51.7
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1121.7 1453 48.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1121.3 1454 48.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1121.3 1468 48.2
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1460 46.8
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1118.2 1450 48.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1486 49.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1114.4 1529 48.5
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1112.1 1535 49.8
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1107.4 1473 51.0
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1105.5 1441 49.1
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1104.4 1476 47.4
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1104.4 1489 49.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 1498 47.9
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1097.4 1442 49.5
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1094.0 1500 48.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1092.8 1468 47.2
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1080.5 1455 47.5
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 3.8e-311 1072.0 1410 49.1
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 4.2e-310 1068.5 1526 47.4
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.0e-308 1063.9 1466 48.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.4e-308 1063.5 1529 49.5
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 4.0e-308 1062.0 1423 46.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.2e-307 1060.4 1473 46.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 4.4e-307 1058.5 1420 48.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.6e-304 1050.0 1432 48.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 4.6e-296 1021.9 1507 44.7
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.3e-294 1015.4 1477 45.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.1e-292 1010.7 1457 48.8
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 9.8e-291 1004.2 1404 47.9
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.1e-289 998.8 1400 48.1
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 5.1e-287 991.9 1495 45.1
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-286 989.9 951 58.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.6e-285 985.7 768 67.1
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.2e-281 971.1 1005 54.3
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.3e-274 950.7 1484 44.3
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 7.3e-270 934.9 1401 46.9
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.3e-263 914.1 1412 42.5
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 4.8e-261 905.6 1286 47.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 7.6e-259 898.3 1460 45.2
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.2e-257 892.9 1381 47.6
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 6.7e-255 885.2 984 50.8
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.1e-241 841.3 1409 44.6
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.5e-241 840.1 2364 33.1
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.1e-236 822.8 1335 43.5
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.8e-226 789.6 1392 41.1
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.2e-211 741.5 787 53.0
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 6.1e-208 729.2 1407 35.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.1e-188 665.2 538 63.9
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.1e-188 665.2 1231 37.6
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.1e-184 651.0 1376 36.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.4e-182 643.3 1196 43.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.6e-171 606.7 1510 34.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 6.0e-171 606.3 702 49.4
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.0e-166 591.3 628 59.7
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.0e-154 552.4 864 41.2
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.1e-151 542.3 933 42.6
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.3e-141 508.8 417 65.7
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.7e-139 501.1 1332 33.2
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.1e-123 448.4 551 57.2
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.0e-114 419.5 546 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.1e-103 381.3 1499 26.4
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.3e-98 365.2 728 40.2
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.7e-98 363.6 494 41.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.0e-97 362.1 831 31.5
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 9.1e-95 353.2 1527 28.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 7.2e-92 343.6 1463 26.2
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.0e-79 300.4 290 49.7
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.9e-76 292.4 411 47.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.7e-64 252.7 375 41.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.7e-61 242.7 434 45.9
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.3e-61 242.3 341 45.5
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.6e-54 218.0 151 75.5
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.4e-47 195.7 853 24.6
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-43 181.4 549 26.6
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.7e-43 181.4 151 66.2
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-41 176.8 131 71.0
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.9e-41 173.7 385 32.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-39 169.9 274 36.1
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 7.8e-38 164.1 156 59.6
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.6e-35 155.2 572 37.2
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.4e-34 153.3 552 26.8
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-29 136.3 142 62.0
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.0e-29 135.6 211 40.3
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.0e-25 122.9 99 62.6
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.1e-23 117.1 354 28.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.2e-23 115.5 673 23.0
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.0e-21 110.5 100 57.0
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.3e-21 110.2 75 74.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.5e-20 105.9 70 74.3
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.8e-19 102.4 181 37.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 2.2e-16 92.8 74 58.1
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.9e-16 92.4 240 32.1
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-15 90.5 74 63.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.5e-14 85.5 53 81.1
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.5e-12 80.1 561 21.6
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 6.3e-11 74.7 166 31.9
MD10G1319200 Malus domestica HOM05D005165 ORTHO05D006361 5.3e-10 71.6 134 71.6
FAN21G4061 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.5e-09 68.6 80 46.2
FvH4_4g08481 Fragaria vesca HOM05D015922 ORTHO05D001739 4.6e-06 58.5 53 54.7
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 7.9e-06 57.8 163 30.7


User provided reference genes

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