Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 4.6e-31 137.1 63 100.0
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 6.7e-14 80.1 41 87.8
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 6.7e-14 80.1 41 87.8
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 6.7e-14 80.1 41 87.8
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 6.7e-14 80.1 41 87.8
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 1.5e-13 79.0 41 85.4
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 1.5e-13 79.0 41 85.4
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 85.4
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 85.4
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 85.4
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.9e-13 78.6 41 82.9
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.3e-13 77.8 41 82.9
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 4.3e-13 77.4 41 82.9
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 5.7e-13 77.0 41 80.5
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 7.4e-13 76.6 41 80.5
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 82.9
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 9.7e-13 76.3 41 80.5
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 1.3e-12 75.9 41 78.0
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 1.3e-12 75.9 41 78.0
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.3e-12 75.9 41 78.0
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 78.0
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 80.5
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 80.5
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 80.5
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 80.5
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 1.6e-12 75.5 41 80.5
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 2.2e-12 75.1 41 78.0
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 2.2e-12 75.1 41 78.0
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 2.2e-12 75.1 41 78.0
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 2.2e-12 75.1 41 78.0
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 2.8e-12 74.7 41 78.0
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 3.7e-12 74.3 40 82.5
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 3.7e-12 74.3 41 78.0
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 3.7e-12 74.3 41 78.0
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 4.8e-12 73.9 41 78.0
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 4.8e-12 73.9 41 78.0
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 4.8e-12 73.9 41 80.5
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 6.3e-12 73.6 41 75.6
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 8.2e-12 73.2 41 75.6
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 8.2e-12 73.2 41 78.0
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 8.2e-12 73.2 41 78.0
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 8.2e-12 73.2 41 78.0
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 8.2e-12 73.2 41 75.6
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 78.0
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 75.6
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 73.2
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 1.1e-11 72.8 41 78.0
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 1.4e-11 72.4 43 81.4
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 2.4e-11 71.6 47 74.5
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 4.1e-11 70.9 41 75.6
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 5.3e-11 70.5 41 73.2
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 5.3e-11 70.5 41 75.6
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 5.3e-11 70.5 41 75.6
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 6.9e-11 70.1 40 75.0
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 6.9e-11 70.1 40 75.0
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 9.1e-11 69.7 41 70.7
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 9.1e-11 69.7 36 86.1
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.0e-10 68.6 34 91.2
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 3.4e-10 67.8 37 75.7
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.4e-10 67.8 51 62.7
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 4.5e-10 67.4 34 88.2
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 4.5e-10 67.4 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 5.9e-10 67.0 41 68.3
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 5.9e-10 67.0 41 73.2
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 7.7e-10 66.6 41 70.7
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 1.0e-09 66.2 37 81.1
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 1.0e-09 66.2 41 65.9
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.3e-09 65.9 35 82.9
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 1.7e-09 65.5 41 65.9
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.2e-09 65.1 41 65.9
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 3.8e-09 64.3 41 68.3
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 5.0e-09 63.9 44 56.8
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.4e-08 62.4 41 68.3
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 1.9e-08 62.0 34 82.4
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 1.9e-08 62.0 34 82.4
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.5e-08 61.6 39 71.8
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 9.4e-08 59.7 39 66.7
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 2.1e-07 58.5 40 60.0
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 2.1e-07 58.5 40 60.0
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 6.1e-07 57.0 38 68.4
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.0e-06 56.2 34 76.5
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 2.3e-06 55.1 35 62.9


User provided reference genes

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