Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003351 Rosa chinensis HOM05D000048 ORTHO05D013426 5.5e-30 133.7 68 100.0
RcHm_v2.0_Chr5g0003321 Rosa chinensis HOM05D000048 ORTHO05D001179 1.0e-23 112.8 61 96.7
FAN25G3574 Fragaria x ananassa HOM05D000048 ORTHO05D001179 1.4e-17 92.4 64 82.8
MD05G1344500 Malus domestica HOM05D000048 ORTHO05D001179 3.0e-12 74.7 63 65.1
Prupe.4G021900 Prunus persica HOM05D000048 ORTHO05D001179 4.0e-12 74.3 57 70.2
MD05G1344900 Malus domestica HOM05D000048 ORTHO05D001179 1.5e-11 72.4 63 65.1
QL05p073412 Quercus lobata HOM05D000048 ORTHO05D001179 3.7e-10 67.8 57 66.7
Sabra11G0001000 Salix brachista HOM05D000048 ORTHO05D001179 3.7e-10 67.8 58 58.6
QL05p073475 Quercus lobata HOM05D000048 ORTHO05D001179 1.1e-09 66.2 57 64.9
Potri.011G002500 Populus trichocarpa HOM05D000048 ORTHO05D001179 1.4e-09 65.9 56 64.3
Potri.011G002600 Populus trichocarpa HOM05D000048 ORTHO05D001179 2.4e-09 65.1 58 55.2
Sabra11G0000900 Salix brachista HOM05D000048 ORTHO05D001179 2.4e-09 65.1 57 61.4
PGR004G2800 Punica granatum HOM05D000048 ORTHO05D001179 3.1e-09 64.7 60 55.0
QL05p073654 Quercus lobata HOM05D000048 ORTHO05D001179 4.1e-09 64.3 57 63.2
FvH4_3g02260 Fragaria vesca HOM05D000048 ORTHO05D001179 5.4e-09 63.9 54 63.0
CiPaw.09G090800 Carya illinoinensis HOM05D000048 ORTHO05D001179 1.2e-08 62.8 57 57.9
Manes.16G008000 Manihot esculenta HOM05D000048 ORTHO05D001179 1.2e-08 62.8 62 56.5
Eucgr.D01316 Eucalyptus grandis HOM05D000048 ORTHO05D001179 1.6e-08 62.4 60 56.7
Dinv20045 Davidia involucrata HOM05D000048 ORTHO05D001179 2.0e-08 62.0 55 63.6
Potri.011G002400 Populus trichocarpa HOM05D000048 ORTHO05D001179 2.0e-08 62.0 62 58.1
Dinv20043 Davidia involucrata HOM05D000048 ORTHO05D013426 3.5e-08 61.2 71 52.1
Sabra04G0008500 Salix brachista HOM05D000002 ORTHO05D001134 3.5e-08 61.2 55 58.2
Lj1A1229T46 Lonicera japonica HOM05D000048 ORTHO05D001179 4.5e-08 60.8 71 47.9
Sabra14G0116000 Salix brachista HOM05D000048 ORTHO05D001179 4.5e-08 60.8 53 56.6
Ciclev10014968m.g Citrus clementina HOM05D000048 ORTHO05D001179 7.7e-08 60.1 58 53.4
Atru.chr10.2210 Acer truncatum HOM05D000048 ORTHO05D001179 1.0e-07 59.7 67 47.8
Nitab4.5_0006137g0020 Nicotiana tabacum HOM05D000048 ORTHO05D001179 1.0e-07 59.7 57 54.4
DCAR_008150 Daucus carota HOM05D000048 ORTHO05D001179 1.3e-07 59.3 67 50.7
CSS0018157 Camellia sinensis var. sinensis HOM05D000048 ORTHO05D001179 1.7e-07 58.9 54 53.7
CiPaw.10G070300 Carya illinoinensis HOM05D000048 ORTHO05D001179 1.7e-07 58.9 45 66.7
Nitab4.5_0000884g0030 Nicotiana tabacum HOM05D000048 ORTHO05D001179 1.7e-07 58.9 57 52.6
Potri.014G153100 Populus trichocarpa HOM05D000048 ORTHO05D001179 1.7e-07 58.9 38 73.7
Peaxi162Scf00262g01014 Petunia axillaris HOM05D000048 ORTHO05D001179 2.3e-07 58.5 57 52.6
Atru.chr10.2211 Acer truncatum HOM05D000048 ORTHO05D001179 2.9e-07 58.2 59 47.5
TWI18G0099 Tripterygium wilfordii HOM05D000048 ORTHO05D001179 2.9e-07 58.2 63 52.4
CSS0045083 Camellia sinensis var. sinensis HOM05D000048 ORTHO05D013426 3.8e-07 57.8 54 51.9
MELO3C028652.2 Cucumis melo HOM05D000048 ORTHO05D000445 3.8e-07 57.8 50 58.0
Hma1.2p1_0091F.1_g046380 Hydrangea macrophylla HOM05D000048 ORTHO05D001179 3.8e-07 57.8 66 48.5
Nitab4.5_0000031g0420 Nicotiana tabacum HOM05D000048 ORTHO05D001179 3.8e-07 57.8 57 50.9
Potri.004G016400 Populus trichocarpa HOM05D000048 ORTHO05D001179 3.8e-07 57.8 50 60.0
vmacro12205 Vaccinium macrocarpon HOM05D000048 ORTHO05D001179 3.8e-07 57.8 62 48.4
CANSAT56G0641 Cannabis sativa HOM05D000048 ORTHO05D001179 5.0e-07 57.4 56 55.4
Peaxi162Scf00262g01015 Petunia axillaris HOM05D000048 ORTHO05D001179 5.0e-07 57.4 66 57.6
Solyc02g080480.3 Solanum lycopersicum HOM05D000048 ORTHO05D001179 5.0e-07 57.4 57 54.4
Sopen02g025160 Solanum pennellii HOM05D000048 ORTHO05D001179 5.0e-07 57.4 57 54.4
PGSC0003DMG400016458 Solanum tuberosum HOM05D000048 ORTHO05D001179 5.0e-07 57.4 57 52.6
Dinv13885 Davidia involucrata HOM05D000048 ORTHO05D001179 6.6e-07 57.0 65 49.2
Hma1.2p1_1047F.1_g251670 Hydrangea macrophylla HOM05D000048 ORTHO05D013426 6.6e-07 57.0 57 54.4
MD10G1320300 Malus domestica HOM05D000048 ORTHO05D001179 6.6e-07 57.0 62 53.2
Thecc.02G314000 Theobroma cacao HOM05D000048 ORTHO05D001179 6.6e-07 57.0 55 49.1
vmacro11368 Vaccinium macrocarpon HOM05D000048 ORTHO05D013426 6.6e-07 57.0 48 54.2
COL.COLO4_27704 Corchorus olitorius HOM05D000048 ORTHO05D001179 1.1e-06 56.2 54 53.7
MELO3C028593.2 Cucumis melo HOM05D000048 ORTHO05D000445 1.1e-06 56.2 57 52.6
Manes.16G007900 Manihot esculenta HOM05D000048 ORTHO05D001179 1.1e-06 56.2 54 57.4
RcHm_v2.0_Chr5g0003331 Rosa chinensis HOM05D000048 ORTHO05D001179 1.1e-06 56.2 71 50.7
Sabra04G0008400 Salix brachista HOM05D000048 ORTHO05D001179 1.1e-06 56.2 50 58.0
Duzib251G0032 Durio zibethinus HOM05D000048 ORTHO05D001179 1.5e-06 55.8 55 49.1
Gohir.D05G173000 Gossypium hirsutum HOM05D000048 ORTHO05D001179 1.5e-06 55.8 39 69.2
Gorai.009G178100 Gossypium raimondii HOM05D000048 ORTHO05D001179 1.5e-06 55.8 39 69.2
MD05G1344300 Malus domestica HOM05D000048 ORTHO05D001179 1.5e-06 55.8 54 57.4
Potri.011G002800 Populus trichocarpa HOM05D000048 ORTHO05D001179 1.5e-06 55.8 41 63.4
Haze_06791 Corylus avellana HOM05D000048 ORTHO05D001179 1.9e-06 55.5 58 53.4
Prupe.4G022000 Prunus persica HOM05D000048 ORTHO05D001179 1.9e-06 55.5 63 50.8
RcHm_v2.0_Chr5g0003381 Rosa chinensis HOM05D000048 ORTHO05D001179 1.9e-06 55.5 53 58.5
TAR624G0554 Trochodendron aralioides HOM05D000048 ORTHO05D001179 1.9e-06 55.5 59 59.3
Cc00_g02170 Coffea canephora HOM05D000048 ORTHO05D001179 2.5e-06 55.1 53 50.9
MELO3C002526.2 Cucumis melo HOM05D000048 ORTHO05D001179 2.5e-06 55.1 57 47.4
Rhsim13G0154600 Rhododendron simsii HOM05D000048 ORTHO05D001179 2.5e-06 55.1 46 60.9
Atru.chr6.3177 Acer truncatum HOM05D000048 ORTHO05D001179 3.3e-06 54.7 36 66.7
Actinidia09714 Actinidia chinensis HOM05D000048 ORTHO05D001179 3.3e-06 54.7 39 66.7
Cfa014406 Carpinus fangiana HOM05D000048 ORTHO05D001179 3.3e-06 54.7 56 50.0
Nn5g29367 Nelumbo nucifera HOM05D000048 ORTHO05D001179 3.3e-06 54.7 65 49.2
Peaxi162Scf00262g01018 Petunia axillaris HOM05D000048 ORTHO05D013426 3.3e-06 54.7 57 50.9
QL05p073427 Quercus lobata HOM05D000048 ORTHO05D001179 3.3e-06 54.7 73 45.2
Rhsim02G0108100 Rhododendron simsii HOM05D000048 ORTHO05D001179 3.3e-06 54.7 38 65.8
PGSC0003DMG400016457 Solanum tuberosum HOM05D000048 ORTHO05D001179 3.3e-06 54.7 55 54.5
Thecc.06G219200 Theobroma cacao HOM05D000048 ORTHO05D001179 3.3e-06 54.7 73 42.5
vmacro15811 Vaccinium macrocarpon HOM05D000048 ORTHO05D001179 3.3e-06 54.7 38 65.8
Migut.M01311 Erythranthe guttata HOM05D000048 ORTHO05D001179 4.2e-06 54.3 60 46.7
Eucgr.D01315 Eucalyptus grandis HOM05D000048 ORTHO05D001179 4.2e-06 54.3 39 66.7
Gohir.D10G013100 Gossypium hirsutum HOM05D000048 ORTHO05D001179 4.2e-06 54.3 55 54.5
Gorai.011G014800 Gossypium raimondii HOM05D000048 ORTHO05D001179 4.2e-06 54.3 55 54.5
HanXRQChr16g0515961 Helianthus annuus HOM05D000048 ORTHO05D001179 4.2e-06 54.3 56 53.6
Manes.17G038400 Manihot esculenta HOM05D000048 ORTHO05D001179 4.2e-06 54.3 54 57.4
Medtr2g022980 Medicago truncatula HOM05D000048 ORTHO05D001179 4.2e-06 54.3 56 53.6
Potri.011G002700 Populus trichocarpa HOM05D000048 ORTHO05D001179 4.2e-06 54.3 41 61.0
Rhsim06G0162000 Rhododendron simsii HOM05D000048 ORTHO05D001179 4.2e-06 54.3 49 53.1
BcaC05g28142 Brassica carinata HOM05D000048 ORTHO05D001179 5.5e-06 53.9 45 57.8
C05p41720 Brassica napus HOM05D000048 ORTHO05D001179 5.5e-06 53.9 45 57.8
CsaV3_1G011510 Cucumis sativus L. HOM05D000048 ORTHO05D001179 5.5e-06 53.9 57 45.6
Gohir.A05G169800 Gossypium hirsutum HOM05D000048 ORTHO05D001179 5.5e-06 53.9 76 44.7
Hma1.2p1_1047F.1_g251630 Hydrangea macrophylla HOM05D000048 ORTHO05D001179 5.5e-06 53.9 59 50.8
Lsat_1_v5_gn_4_59521 Lactuca sativa HOM05D000048 ORTHO05D001179 5.5e-06 53.9 65 49.2
Rhsim02G0107700 Rhododendron simsii HOM05D000048 ORTHO05D000006 5.5e-06 53.9 67 46.3
Rhsim06G0162100 Rhododendron simsii HOM05D000048 ORTHO05D001179 5.5e-06 53.9 51 51.0
BcaC05g28143 Brassica carinata HOM05D000048 ORTHO05D001179 7.2e-06 53.5 53 50.9
A05p27050 Brassica napus HOM05D000048 ORTHO05D001179 7.2e-06 53.5 53 50.9
C05p41730 Brassica napus HOM05D000048 ORTHO05D001179 7.2e-06 53.5 53 50.9
BolC5t32907H Brassica oleracea HOM05D000048 ORTHO05D001179 7.2e-06 53.5 53 50.9
BraA05t21591Z Brassica rapa HOM05D000048 ORTHO05D001179 7.2e-06 53.5 53 50.9
ClCG02G001910 Citrullus lanatus HOM05D000048 ORTHO05D001179 7.2e-06 53.5 64 50.0
COL.COLO4_06758 Corchorus olitorius HOM05D000048 ORTHO05D001179 7.2e-06 53.5 39 61.5
Duzib235G0606 Durio zibethinus HOM05D000048 ORTHO05D001179 7.2e-06 53.5 72 45.8
MSTRG.7219 Avicennia marina HOM05D000048 ORTHO05D001179 9.5e-06 53.1 55 56.4
BcaB04g20573 Brassica carinata HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
BcaC09g49103 Brassica carinata HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
A01p33280 Brassica napus HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
A05p27040 Brassica napus HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
C01p42520 Brassica napus HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
BolC1t04207H Brassica oleracea HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
BraA01t03445Z Brassica rapa HOM05D000048 ORTHO05D001179 9.5e-06 53.1 45 57.8
Cpa.g.sc152.2 Carica papaya HOM05D000048 ORTHO05D001179 9.5e-06 53.1 64 53.1
Hma1.2p1_1142F.1_g260960 Hydrangea macrophylla HOM05D000048 ORTHO05D001179 9.5e-06 53.1 57 49.1
Oeu000561.1 Olea europaea HOM05D000396 ORTHO05D000116 9.5e-06 53.1 62 46.8


User provided reference genes

Program Settings