Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003241 Rosa chinensis HOM05D001548 ORTHO05D003922 2.3e-41 171.8 86 100.0
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 1.5e-16 89.4 83 50.6
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 3.4e-16 88.2 83 50.6
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 3.4e-16 88.2 83 50.6
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 3.4e-16 88.2 83 50.6
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 3.4e-16 88.2 83 50.6
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 3.4e-16 88.2 83 50.6
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 9.8e-16 86.7 83 50.6
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 9.8e-16 86.7 83 50.6
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 1.7e-15 85.9 83 50.6
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 1.7e-15 85.9 83 50.6
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 2.2e-15 85.5 83 48.2
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 6.3e-15 84.0 61 63.9
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 6.3e-15 84.0 83 47.0
CiPaw.09G159300 Carya illinoinensis HOM05D001548 ORTHO05D003922 8.3e-15 83.6 61 63.9
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 8.3e-15 83.6 61 60.7
Zm00001eb191990 Zea mays HOM05D001548 ORTHO05D003922 8.3e-15 83.6 61 63.9
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 1.1e-14 83.2 61 62.3
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 1.1e-14 83.2 61 62.3
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 1.8e-14 82.4 83 48.2
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 1.8e-14 82.4 61 62.3
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 1.8e-14 82.4 61 62.3
FvH4_3g02190 Fragaria vesca HOM05D001548 ORTHO05D003922 2.4e-14 82.0 61 60.7
CsaV3_1G014810 Cucumis sativus L. HOM05D001548 ORTHO05D003922 3.1e-14 81.6 61 60.7
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 3.1e-14 81.6 61 63.9
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 3.1e-14 81.6 61 63.9
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 5.4e-14 80.9 61 60.7
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 5.4e-14 80.9 61 59.0
Zm00001eb339820 Zea mays HOM05D001548 ORTHO05D003922 5.4e-14 80.9 60 61.7
FvH4_6g30490 Fragaria vesca HOM05D001548 ORTHO05D003922 7.0e-14 80.5 61 60.7
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 7.0e-14 80.5 61 60.7
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 7.0e-14 80.5 61 60.7
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 9.1e-14 80.1 61 62.3
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 9.1e-14 80.1 61 60.7
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 9.1e-14 80.1 61 60.7
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 9.1e-14 80.1 61 60.7
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.2e-13 79.7 83 48.2
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.2e-13 79.7 61 60.7
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 1.2e-13 79.7 61 59.0
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 1.2e-13 79.7 61 59.0
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 1.6e-13 79.3 61 60.7
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 1.6e-13 79.3 83 48.2
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 1.6e-13 79.3 61 59.0
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 1.6e-13 79.3 83 45.8
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.6e-13 79.3 83 47.0
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 1.6e-13 79.3 61 59.0
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 1.6e-13 79.3 61 59.0
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 2.0e-13 79.0 61 57.4
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 2.0e-13 79.0 69 56.5
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 2.0e-13 79.0 83 45.8
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 2.0e-13 79.0 61 59.0
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 2.0e-13 79.0 61 57.4
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 2.0e-13 79.0 61 60.7
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 57.4
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 59.0
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 55.7
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 55.7
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 59.0
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 2.7e-13 78.6 61 59.0
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 3.5e-13 78.2 61 59.0
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 3.5e-13 78.2 61 59.0
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 3.5e-13 78.2 61 59.0
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 3.5e-13 78.2 62 61.3
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 3.5e-13 78.2 83 47.0
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 3.5e-13 78.2 61 59.0
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 3.5e-13 78.2 61 57.4
CDE11G1200 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.5e-13 77.8 61 59.0
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 4.5e-13 77.8 83 45.8
CAN.G1649.4 Capsicum annuum HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 57.4
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 5.9e-13 77.4 69 55.1
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 60.7
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 59.0
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 59.0
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 57.4
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 5.9e-13 77.4 58 60.3
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 5.9e-13 77.4 83 47.0
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.9e-13 77.4 61 59.0
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 57.4
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 59.0
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 57.4
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 59.0
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 59.0
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 7.7e-13 77.0 83 47.0
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 59.0
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 7.7e-13 77.0 61 59.0
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 1.0e-12 76.6 83 45.8
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 1.0e-12 76.6 83 45.8
RcHm_v2.0_Chr5g0003521 Rosa chinensis HOM05D001548 ORTHO05D003922 1.0e-12 76.6 59 55.9
SEGI_27377 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 1.0e-12 76.6 61 59.0
SEGI_40386 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 1.0e-12 76.6 61 59.0
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 1.0e-12 76.6 61 59.0
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 1.3e-12 76.3 61 59.0
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 1.3e-12 76.3 83 44.6
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 1.3e-12 76.3 61 59.0
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.3e-12 76.3 61 59.0
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 1.3e-12 76.3 61 57.4
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 55.7
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 55.7
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 59.0
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 59.0
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 55.7
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 57.4
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.7e-12 75.9 61 55.7
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 57.4
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 57.4
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 2.3e-12 75.5 58 60.3
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 59.0
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 59.0
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 59.0
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 2.3e-12 75.5 61 55.7
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 2.9e-12 75.1 61 55.7
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 2.9e-12 75.1 61 55.7
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 2.9e-12 75.1 61 55.7
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 3.8e-12 74.7 61 55.7
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 3.8e-12 74.7 61 54.1
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 3.8e-12 74.7 61 57.4
FAN16G3333 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.8e-12 74.7 59 59.3
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 3.8e-12 74.7 61 57.4
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 3.8e-12 74.7 61 57.4
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 5.0e-12 74.3 83 44.6
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 5.0e-12 74.3 61 57.4
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis HOM05D001548 ORTHO05D003922 6.6e-12 73.9 61 54.1
Ah.09g235980 Amaranthus hybridus HOM05D003383 ORTHO05D003890 8.6e-12 73.6 61 55.7
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 8.6e-12 73.6 61 54.1
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 8.6e-12 73.6 61 55.7
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 8.6e-12 73.6 61 55.7
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 1.1e-11 73.2 83 44.6
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 1.1e-11 73.2 61 57.4
Cc09_g10020 Coffea canephora HOM05D001548 ORTHO05D003922 1.5e-11 72.8 85 38.8
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 1.9e-11 72.4 61 55.7
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.9e-11 72.4 83 43.4
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 2.5e-11 72.0 83 43.4
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 4.2e-11 71.2 61 54.1
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 5.5e-11 70.9 61 55.7
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 5.5e-11 70.9 61 55.7
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 7.2e-11 70.5 83 42.2
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 7.2e-11 70.5 61 55.7
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 1.2e-10 69.7 61 54.1
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 1.2e-10 69.7 61 54.1
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 1.2e-10 69.7 61 54.1
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 1.6e-10 69.3 61 54.1
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.6e-10 69.3 70 51.4
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.6e-10 69.3 70 51.4
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 1.6e-10 69.3 61 54.1
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 1.6e-10 69.3 59 57.6
Lalb_Chr15g0090061 Lupinus albus HOM05D001548 ORTHO05D003922 2.1e-10 68.9 61 54.1
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 3.6e-10 68.2 61 54.1
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 3.6e-10 68.2 61 54.1
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 1.8e-09 65.9 61 54.1
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 2.3e-09 65.5 61 55.7
Cc10_g04960 Coffea canephora HOM05D001548 ORTHO05D003922 1.2e-08 63.2 67 41.8
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 1.2e-08 63.2 61 47.5
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 2.0e-08 62.4 61 49.2
CDE05G1551 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 9.8e-08 60.1 51 52.9
ATR0693G262 Amborella trichopoda HOM05D001548 ORTHO05D003922 1.3e-07 59.7 48 60.4
RcHm_v2.0_Chr5g0030211 Rosa chinensis HOM05D001548 ORTHO05D003922 6.3e-07 57.4 61 49.2
RcHm_v2.0_Chr5g0030371 Rosa chinensis HOM05D001548 ORTHO05D003922 6.3e-07 57.4 61 49.2
RcHm_v2.0_Chr5g0030471 Rosa chinensis HOM05D001548 ORTHO05D003922 6.3e-07 57.4 61 49.2
RcHm_v2.0_Chr2g0162661 Rosa chinensis HOM05D001548 ORTHO05D003922 3.1e-06 55.1 43 53.5


User provided reference genes

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