Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003071 Rosa chinensis HOM05D003413 ORTHO05D029654 6.3e-148 527.3 251 100.0
FvH4_3g18090 Fragaria vesca HOM05D013605 ORTHO05D029654 4.7e-34 149.1 254 39.4
FAN16G3424 Fragaria x ananassa HOM05D013605 ORTHO05D029654 8.0e-34 148.3 254 39.4
FAN21G0228 Fragaria x ananassa HOM05D013605 ORTHO05D029654 1.2e-32 144.4 239 36.4
FvH4_2g40190 Fragaria vesca HOM05D013605 ORTHO05D046327 1.2e-18 97.8 267 28.8
FAN11G0573 Fragaria x ananassa HOM05D013605 ORTHO05D208469 6.8e-17 92.0 252 29.0
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.7e-16 89.0 247 30.0
FAN20G2550 Fragaria x ananassa HOM05D013605 ORTHO05D046327 7.5e-16 88.6 262 29.4
FvH4_2g04711 Fragaria vesca HOM05D013605 ORTHO05D197542 1.7e-15 87.4 182 35.2
FvH4_6g30500 Fragaria vesca HOM05D013605 ORTHO05D197864 2.9e-15 86.7 87 51.7
FvH4_1g01201 Fragaria vesca HOM05D040807 ORTHO05D196515 6.4e-15 85.5 253 28.9
FAN15G3072 Fragaria x ananassa HOM05D013605 ORTHO05D002548 5.4e-14 82.4 259 27.8
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 1.1e-11 74.7 119 32.8
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 1.6e-10 70.9 108 36.1
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 2.1e-10 70.5 112 33.9
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 6.2e-10 68.9 108 34.3
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 6.2e-10 68.9 108 35.2
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 8.0e-10 68.6 124 31.5
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 8.0e-10 68.6 108 34.3
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.0e-09 68.2 108 35.2
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 1.4e-09 67.8 108 34.3
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 1.4e-09 67.8 108 34.3
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 1.8e-09 67.4 117 32.5
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 1.8e-09 67.4 108 34.3
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 1.8e-09 67.4 112 33.0
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 1.8e-09 67.4 112 33.9
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 2.3e-09 67.0 108 34.3
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 34.3
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 33.3
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 3.1e-09 66.6 112 33.0
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 34.3
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 34.3
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 33.3
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 34.3
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 3.1e-09 66.6 108 34.3
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 4.0e-09 66.2 112 32.1
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 4.0e-09 66.2 108 34.3
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 4.0e-09 66.2 112 33.0
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 4.0e-09 66.2 110 33.6
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 34.3
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 5.2e-09 65.9 108 33.3
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 34.3
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 6.8e-09 65.5 107 34.6
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 6.8e-09 65.5 112 32.1
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 34.3
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 6.8e-09 65.5 108 33.3
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 31.5
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
Sopen03g016110 Solanum pennellii HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 33.3
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 8.9e-09 65.1 108 34.3
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 32.4
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 1.2e-08 64.7 108 33.3
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.5e-08 64.3 107 32.7
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.5e-08 64.3 107 32.7
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 34.3
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 1.5e-08 64.3 112 31.2
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 34.3
Lalb_Chr06g0172271 Lupinus albus HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 32.4
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 1.5e-08 64.3 112 32.1
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 1.5e-08 64.3 108 33.3
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 32.4
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 32.4
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 32.4
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 31.5
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 2.0e-08 63.9 113 31.9
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 32.4
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 2.0e-08 63.9 108 33.3
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 2.6e-08 63.5 108 32.4
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 3.4e-08 63.2 108 32.4
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 3.4e-08 63.2 108 32.4
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 3.4e-08 63.2 108 33.3
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 3.4e-08 63.2 107 33.6
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.4e-08 63.2 108 32.4
Actinidia09660 Actinidia chinensis HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 31.5
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 32.4
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 34.3
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 33.3
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 33.3
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 4.4e-08 62.8 108 33.3
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 4.4e-08 62.8 112 31.2
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 4.4e-08 62.8 112 32.1
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 5.8e-08 62.4 108 31.5
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 5.8e-08 62.4 108 32.4
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 5.8e-08 62.4 108 32.4
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 5.8e-08 62.4 107 32.7
AagrBONN_evm.TU.Sc2ySwM_117.841 Anthoceros agrestis HOM05D003413 ORTHO05D004197 7.5e-08 62.0 108 30.6
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 7.5e-08 62.0 112 31.2
MELO3C011880.2 Cucumis melo HOM05D003413 ORTHO05D004197 7.5e-08 62.0 106 33.0
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 7.5e-08 62.0 108 32.4
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 7.5e-08 62.0 107 32.7
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 9.8e-08 61.6 108 32.4
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 9.8e-08 61.6 108 32.4
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 9.8e-08 61.6 107 32.7
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 9.8e-08 61.6 108 32.4
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 9.8e-08 61.6 112 31.2
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 9.8e-08 61.6 112 32.1
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.3e-07 61.2 108 32.4
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 1.3e-07 61.2 109 33.0
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 1.3e-07 61.2 109 33.0
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 1.3e-07 61.2 108 31.5
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.3e-07 61.2 128 32.0
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 2.2e-07 60.5 108 29.6
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 2.2e-07 60.5 108 29.6
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 2.2e-07 60.5 107 31.8
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 3.7e-07 59.7 108 30.6
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 4.9e-07 59.3 112 27.7
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 4.9e-07 59.3 102 31.4
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 6.4e-07 58.9 108 28.7
FAN12G2439 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.9e-06 57.4 77 36.4


User provided reference genes

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