Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0002981 Rosa chinensis HOM05D000178 ORTHO05D348036 9.3e-57 223.4 119 100.0
FvH4_2g09440 Fragaria vesca HOM05D000178 ORTHO05D001740 9.0e-28 127.1 84 79.8
FAN15G3667 Fragaria x ananassa HOM05D000178 ORTHO05D001740 9.0e-28 127.1 84 79.8
FAN24G0247 Fragaria x ananassa HOM05D000178 ORTHO05D001740 9.0e-28 127.1 84 79.8
FAN20G1117 Fragaria x ananassa HOM05D000178 ORTHO05D001740 1.5e-27 126.3 84 79.8
RcHm_v2.0_Chr5g0048971 Rosa chinensis HOM05D000178 ORTHO05D001740 3.4e-27 125.2 84 79.8
FAN27G0028 Fragaria x ananassa HOM05D000178 ORTHO05D001740 4.5e-27 124.8 84 78.6
Haze_23579 Corylus avellana HOM05D000178 ORTHO05D001740 1.1e-14 83.6 87 63.2
MELO3C015039.2 Cucumis melo HOM05D000178 ORTHO05D001740 2.5e-14 82.4 90 57.8
CsaV3_1G043960 Cucumis sativus L. HOM05D000178 ORTHO05D001740 2.5e-14 82.4 90 57.8
MD03G1158600 Malus domestica HOM05D000178 ORTHO05D001740 2.5e-14 82.4 89 58.4
Oeu024804.1 Olea europaea HOM05D000178 ORTHO05D001740 7.4e-14 80.9 90 58.9
Lj2C35T15 Lonicera japonica HOM05D000178 ORTHO05D001740 2.2e-13 79.3 85 62.4
TAR369G0574 Trochodendron aralioides HOM05D000178 ORTHO05D001740 2.2e-13 79.3 91 58.2
ClCG03G011970 Citrullus lanatus HOM05D000178 ORTHO05D001740 2.8e-13 79.0 90 57.8
Dinv08422 Davidia involucrata HOM05D000178 ORTHO05D001740 2.8e-13 79.0 89 58.4
Dinv16089 Davidia involucrata HOM05D000178 ORTHO05D001740 2.8e-13 79.0 89 58.4
Prupe.6G146600 Prunus persica HOM05D000178 ORTHO05D001740 3.7e-13 78.6 89 57.3
THA.LOC104810938 Tarenaya hassleriana HOM05D000178 ORTHO05D001740 3.7e-13 78.6 97 55.7
Lsat_1_v5_gn_8_21761 Lactuca sativa HOM05D000178 ORTHO05D001740 1.8e-12 76.3 99 49.5
Nn2g14356 Nelumbo nucifera HOM05D000178 ORTHO05D001740 1.8e-12 76.3 93 57.0
MBI11_g02025_MAGBIO Magnolia biondii HOM05D000178 ORTHO05D001740 5.3e-12 74.7 87 59.8
Atru.chr3.3096 Acer truncatum HOM05D000178 ORTHO05D001740 6.9e-12 74.3 85 57.6
Actinidia34734 Actinidia chinensis HOM05D000178 ORTHO05D001740 9.1e-12 73.9 97 52.6
CANSAT54G1593 Cannabis sativa HOM05D000178 ORTHO05D001740 9.1e-12 73.9 103 52.4
Cc02_g09330 Coffea canephora HOM05D000178 ORTHO05D001740 1.2e-11 73.6 111 50.5
TWI31G0089 Tripterygium wilfordii HOM05D000178 ORTHO05D001740 1.2e-11 73.6 84 53.6
TAR633G0873 Trochodendron aralioides HOM05D000178 ORTHO05D001740 1.2e-11 73.6 89 57.3
CiPaw.14G093300 Carya illinoinensis HOM05D000178 ORTHO05D001740 2.0e-11 72.8 90 54.4
QL01p019334 Quercus lobata HOM05D000178 ORTHO05D001740 2.0e-11 72.8 88 55.7
Duzib170G0063 Durio zibethinus HOM05D000178 ORTHO05D001740 2.6e-11 72.4 93 54.8
THA.LOC104799570 Tarenaya hassleriana HOM05D000178 ORTHO05D001740 2.6e-11 72.4 97 52.6
Nn6g34629 Nelumbo nucifera HOM05D000178 ORTHO05D001740 3.4e-11 72.0 94 54.3
Rhsim09G0140800 Rhododendron simsii HOM05D000178 ORTHO05D001740 3.4e-11 72.0 120 48.3
BcaB01g04744 Brassica carinata HOM05D000178 ORTHO05D001740 4.5e-11 71.6 94 53.2
Manes.04G062900 Manihot esculenta HOM05D000178 ORTHO05D001740 4.5e-11 71.6 88 52.3
vmacro10325 Vaccinium macrocarpon HOM05D000178 ORTHO05D001740 5.9e-11 71.2 119 48.7
BcaC01g06606 Brassica carinata HOM05D000178 ORTHO05D001740 7.7e-11 70.9 94 52.1
Hma1.2p1_0926F.1_g237570 Hydrangea macrophylla HOM05D000178 ORTHO05D001740 7.7e-11 70.9 94 53.2
Lj3g0023971 Lotus japonicus HOM05D000178 ORTHO05D001740 7.7e-11 70.9 96 49.0
CDE07G1339 Ceratophyllum demersum HOM05D000178 ORTHO05D001740 1.0e-10 70.5 93 53.8
Aa31LG1G13340 Aethionema arabicum HOM05D000178 ORTHO05D001740 1.3e-10 70.1 94 48.9
ATR0697G109 Amborella trichopoda HOM05D000178 ORTHO05D001740 1.3e-10 70.1 93 49.5
PSO339G1534 Papaver somniferum HOM05D000178 ORTHO05D001740 1.3e-10 70.1 91 53.8
PSO384G2629 Papaver somniferum HOM05D000178 ORTHO05D001740 1.3e-10 70.1 91 53.8
Thhalv10013910m.g Eutrema salsugineum HOM05D000178 ORTHO05D001740 1.7e-10 69.7 93 51.6
HanXRQChr12g0368301 Helianthus annuus HOM05D000178 ORTHO05D001740 1.7e-10 69.7 100 48.0
Nitab4.5_0003927g0010 Nicotiana tabacum HOM05D000178 ORTHO05D001740 1.7e-10 69.7 97 52.6
Actinidia31112 Actinidia chinensis HOM05D000178 ORTHO05D001740 2.2e-10 69.3 97 55.7
Peaxi162Scf00135g00132 Petunia axillaris HOM05D000178 ORTHO05D001740 2.2e-10 69.3 97 52.6
PGSC0003DMG400025432 Solanum tuberosum HOM05D000178 ORTHO05D001740 2.2e-10 69.3 97 51.5
Migut.F01580 Erythranthe guttata HOM05D000178 ORTHO05D001740 2.9e-10 68.9 85 54.1
Atru.chr12.1079 Acer truncatum HOM05D000178 ORTHO05D001740 5.0e-10 68.2 101 48.5
Cpa.g.sc103.22 Carica papaya HOM05D000178 ORTHO05D001740 5.0e-10 68.2 88 54.5
QL04p048031 Quercus lobata HOM05D000178 ORTHO05D001740 5.0e-10 68.2 87 47.1
BcaC01g02080 Brassica carinata HOM05D000178 ORTHO05D001740 6.5e-10 67.8 93 51.6
C03p68790 Brassica napus HOM05D000178 ORTHO05D001740 6.5e-10 67.8 93 51.6
BolC3t19133H Brassica oleracea HOM05D000178 ORTHO05D001740 6.5e-10 67.8 93 51.6
Carub.0006s1971 Capsella rubella HOM05D000178 ORTHO05D001740 6.5e-10 67.8 93 50.5
Ca_01627_v3 Cicer arietinum L. HOM05D000178 ORTHO05D001740 6.5e-10 67.8 94 50.0
Sopen04g004860 Solanum pennellii HOM05D000178 ORTHO05D001740 6.5e-10 67.8 90 52.2
AT5G22070 Arabidopsis thaliana HOM05D000178 ORTHO05D001740 8.5e-10 67.4 93 50.5
BcaB01g01197 Brassica carinata HOM05D000178 ORTHO05D001740 8.5e-10 67.4 93 52.7
SGA_v2.0_scaffold13G06423 Striga asiatica HOM05D000178 ORTHO05D001740 8.5e-10 67.4 89 52.8
Ah.15g098880 Amaranthus hybridus HOM05D000178 ORTHO05D001740 1.1e-09 67.0 102 46.1
C03p12170 Brassica napus HOM05D000178 ORTHO05D001740 1.1e-09 67.0 117 45.3
BolC3t13690H Brassica oleracea HOM05D000178 ORTHO05D001740 1.1e-09 67.0 117 45.3
BraA03t10370Z Brassica rapa HOM05D000178 ORTHO05D001740 1.1e-09 67.0 117 45.3
CDE04G3386 Ceratophyllum demersum HOM05D000178 ORTHO05D001740 1.1e-09 67.0 93 52.7
Gohir.A05G077700 Gossypium hirsutum HOM05D000178 ORTHO05D001740 1.1e-09 67.0 86 54.7
Gohir.D05G080500 Gossypium hirsutum HOM05D000178 ORTHO05D001740 1.1e-09 67.0 86 54.7
Gorai.009G082200 Gossypium raimondii HOM05D000178 ORTHO05D001740 1.1e-09 67.0 86 54.7
TPR.G4159 Trifolium pratense HOM05D000178 ORTHO05D001740 1.1e-09 67.0 105 47.6
Aqoxy1G00629 Aquilegia oxysepala HOM05D000178 ORTHO05D001740 1.4e-09 66.6 89 53.9
Duzib168G1927 Durio zibethinus HOM05D000178 ORTHO05D001740 1.4e-09 66.6 85 55.3
Lsat_1_v5_gn_2_105941 Lactuca sativa HOM05D000178 ORTHO05D001740 1.4e-09 66.6 88 50.0
Nitab4.5_0011157g0010 Nicotiana tabacum HOM05D000178 ORTHO05D001740 1.4e-09 66.6 94 47.9
CARHR191460 Cardamine hirsuta HOM05D000178 ORTHO05D001740 1.9e-09 66.2 91 51.6
Duzib150G0222 Durio zibethinus HOM05D000178 ORTHO05D001740 1.9e-09 66.2 86 55.8
AL6G33040 Arabidopsis lyrata HOM05D000178 ORTHO05D001740 2.5e-09 65.9 93 49.5
A03p10580 Brassica napus HOM05D000178 ORTHO05D001740 2.5e-09 65.9 117 44.4
A06p22200 Brassica napus HOM05D000178 ORTHO05D001740 3.2e-09 65.5 93 51.6
BraA06t25308Z Brassica rapa HOM05D000178 ORTHO05D001740 3.2e-09 65.5 93 51.6
Nitab4.5_0001781g0120 Nicotiana tabacum HOM05D000178 ORTHO05D001740 3.2e-09 65.5 93 48.4
Thecc.09G270600 Theobroma cacao HOM05D000178 ORTHO05D001740 3.2e-09 65.5 86 58.1
Os12g0618800 Oryza sativa ssp. japonica HOM05D000178 ORTHO05D001740 4.2e-09 65.1 90 46.7
Phvul.005G118301 Phaseolus vulgaris HOM05D000178 ORTHO05D001740 4.2e-09 65.1 127 43.3
Sp6g23120 Schrenkiella parvula HOM05D000178 ORTHO05D001740 4.2e-09 65.1 91 50.5
Solyc04g009760.2 Solanum lycopersicum HOM05D000178 ORTHO05D001740 5.5e-09 64.7 90 50.0
unitig_46.g18646 Utricularia gibba HOM05D000178 ORTHO05D001740 5.5e-09 64.7 85 50.6
Cfa010520 Carpinus fangiana HOM05D000178 ORTHO05D001740 7.2e-09 64.3 90 50.0
Dinv18852 Davidia involucrata HOM05D000178 ORTHO05D001740 9.4e-09 63.9 100 47.0
Potri.009G017300 Populus trichocarpa HOM05D000178 ORTHO05D001740 9.4e-09 63.9 94 52.1
Glyma.13G311800 Glycine max HOM05D000178 ORTHO05D001740 1.2e-08 63.5 101 46.5
Zm00001eb218590 Zea mays HOM05D000178 ORTHO05D001740 1.2e-08 63.5 125 39.2
Sc09g0005070 Simmondsia chinensis HOM05D000178 ORTHO05D001740 1.6e-08 63.2 87 47.1
Glyma.12G189800 Glycine max HOM05D000178 ORTHO05D001740 2.7e-08 62.4 99 45.5
arahy.Tifrunner.gnm1.ann1.IB4S38 Arachis hypogaea HOM05D000178 ORTHO05D001740 3.6e-08 62.0 96 47.9
DCAR_028773 Daucus carota HOM05D000178 ORTHO05D001740 3.6e-08 62.0 84 47.6
CiPaw.14G035000 Carya illinoinensis HOM05D000178 ORTHO05D001740 4.7e-08 61.6 92 50.0
arahy.Tifrunner.gnm1.ann1.AR5SA1 Arachis hypogaea HOM05D000178 ORTHO05D001740 6.1e-08 61.2 90 48.9
Os03g0648100 Oryza sativa ssp. japonica HOM05D000178 ORTHO05D001740 6.1e-08 61.2 93 41.9
Medtr2g087610 Medicago truncatula HOM05D000178 ORTHO05D001740 7.9e-08 60.8 117 46.2
CAN.G186.59 Capsicum annuum HOM05D000178 ORTHO05D001740 1.0e-07 60.5 96 44.8
PGR119G1489 Punica granatum HOM05D000178 ORTHO05D001740 1.4e-07 60.1 84 48.8
Peaxi162Scf00429g00130 Petunia axillaris HOM05D000178 ORTHO05D001740 2.3e-07 59.3 88 46.6
CAN.G742.31 Capsicum annuum HOM05D000178 ORTHO05D001740 3.0e-07 58.9 87 46.0
Actinidia24260 Actinidia chinensis HOM05D000178 ORTHO05D001740 5.1e-07 58.2 120 42.5
Solyc11g006470.2 Solanum lycopersicum HOM05D000178 ORTHO05D001740 5.1e-07 58.2 101 43.6
Sopen11g002360 Solanum pennellii HOM05D000178 ORTHO05D001740 5.1e-07 58.2 101 43.6
PGSC0003DMG400002000 Solanum tuberosum HOM05D000178 ORTHO05D001740 5.1e-07 58.2 101 43.6
Sabra08G0012100 Salix brachista HOM05D000178 ORTHO05D001740 6.7e-07 57.8 84 46.4
CSS0047749 Camellia sinensis var. sinensis HOM05D000178 ORTHO05D001740 8.8e-07 57.4 91 49.5
Lalb_Chr01g0005851 Lupinus albus HOM05D000178 ORTHO05D001740 8.8e-07 57.4 107 45.8
PGSC0003DMG400005902 Solanum tuberosum HOM05D000178 ORTHO05D001740 1.1e-06 57.0 90 43.3
SHI25262 Sapria himalayana HOM05D000178 ORTHO05D001740 1.5e-06 56.6 88 45.5
CiPaw.13G044100 Carya illinoinensis HOM05D000178 ORTHO05D001740 2.0e-06 56.2 91 46.2
Ciclev10015736m.g Citrus clementina HOM05D000178 ORTHO05D001740 2.0e-06 56.2 94 46.8
AT3G52060 Arabidopsis thaliana HOM05D000178 ORTHO05D001740 2.6e-06 55.8 88 45.5
CAN.G143.45 Capsicum annuum HOM05D000178 ORTHO05D001740 2.6e-06 55.8 99 45.5
Nitab4.5_0007359g0010 Nicotiana tabacum HOM05D000178 ORTHO05D001740 2.6e-06 55.8 88 43.2
Sc12g0000340 Simmondsia chinensis HOM05D000178 ORTHO05D001740 2.6e-06 55.8 94 44.7
Hma1.2p1_0101F.1_g049610 Hydrangea macrophylla HOM05D000178 ORTHO05D001740 4.4e-06 55.1 86 46.5
Peaxi162Scf00098g00814 Petunia axillaris HOM05D000178 ORTHO05D001740 4.4e-06 55.1 123 38.2
SalBow3G4271 Salvia bowleyana HOM05D000178 ORTHO05D001740 4.4e-06 55.1 85 49.4
AL5G32610 Arabidopsis lyrata HOM05D000178 ORTHO05D001740 5.7e-06 54.7 84 44.0
EL10Ac7g16283 Beta vulgaris HOM05D000178 ORTHO05D001740 5.7e-06 54.7 102 41.2
arahy.Tifrunner.gnm1.ann1.2X1NQK Arachis hypogaea HOM05D000178 ORTHO05D001740 7.4e-06 54.3 91 40.7
arahy.Tifrunner.gnm1.ann1.39K1JV Arachis hypogaea HOM05D000178 ORTHO05D001740 7.4e-06 54.3 91 40.7
SGA_v2.0_scaffold22G09815 Striga asiatica HOM05D000178 ORTHO05D001740 9.7e-06 53.9 100 42.0
Thecc.10G117700 Theobroma cacao HOM05D000178 ORTHO05D001740 9.7e-06 53.9 86 47.7


User provided reference genes

Program Settings