Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 2.9e-280 968.0 516 100.0
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 8.5e-232 807.0 522 84.7
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.8e-227 792.0 522 83.7
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.8e-174 615.9 518 69.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 3.6e-174 615.5 527 66.4
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 3.9e-152 542.3 509 59.5
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 3.1e-149 532.7 500 59.8
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.6e-148 528.1 493 58.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 8.4e-147 524.6 506 60.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.4e-146 523.1 476 60.5
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 7.1e-146 521.5 483 60.9
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 9.3e-146 521.2 519 58.0
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-145 520.8 500 61.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.5e-145 519.2 474 60.3
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.5e-143 513.1 475 59.2
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.5e-143 513.1 478 59.2
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 3.3e-143 512.7 482 57.5
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.4e-141 506.5 479 58.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 3.1e-141 506.1 495 57.8
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.5e-140 503.8 499 57.7
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 7.6e-140 501.5 517 54.4
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 3.2e-138 496.1 479 57.0
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 6.0e-137 491.9 486 56.8
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.0e-136 489.6 472 55.5
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 5.1e-136 488.8 479 56.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 8.7e-136 488.0 475 56.8
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.9e-135 486.9 516 54.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.5e-135 486.5 473 57.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.8e-134 482.3 507 55.2
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.8e-133 480.3 506 55.1
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.4e-133 479.9 524 53.4
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.1e-133 479.2 522 54.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 9.0e-133 478.0 479 56.8
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.6e-132 476.5 506 58.1
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.4e-132 476.1 492 54.5
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 4.5e-132 475.7 478 55.6
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 5.9e-132 475.3 492 53.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.2e-131 473.4 503 55.1
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.1e-130 471.1 494 53.4
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 3.2e-130 469.5 491 54.4
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 9.4e-130 468.0 494 54.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 3.6e-129 466.1 478 54.8
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 7.9e-129 464.9 491 53.4
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.0e-128 464.5 488 54.7
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.4e-128 464.2 486 55.1
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 3.0e-128 463.0 506 54.0
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 3.0e-128 463.0 497 52.9
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.9e-128 462.6 491 53.8
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.1e-127 461.1 493 54.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.0e-127 460.3 503 54.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-127 460.3 491 52.7
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.5e-127 459.9 480 54.4
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 3.3e-127 459.5 481 51.6
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.8e-126 456.4 494 52.6
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.8e-126 455.7 499 51.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.4e-125 453.4 481 55.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 5.3e-125 452.2 518 50.6
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 6.9e-125 451.8 503 51.7
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 9.1e-125 451.4 474 54.0
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.2e-124 451.1 476 52.9
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.5e-124 450.7 478 52.9
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.4e-124 449.5 560 47.9
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.3e-123 447.6 483 52.2
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.3e-123 447.6 552 47.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 2.7e-121 439.9 480 52.3
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 3.6e-121 439.5 481 51.4
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.4e-120 437.6 486 52.9
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.8e-120 437.2 487 51.1
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 2.3e-120 436.8 481 50.7
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.9e-120 436.0 481 51.6
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.5e-119 434.1 480 50.4
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.6e-119 433.3 482 51.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.4e-119 432.6 475 51.6
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.7e-118 430.6 479 51.1
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.8e-118 429.9 533 47.3
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 3.7e-118 429.5 478 49.6
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 8.2e-118 428.3 476 49.8
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.4e-117 426.8 478 49.2
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.2e-116 424.5 478 49.8
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 7.7e-116 421.8 475 49.9
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.7e-116 421.8 480 50.2
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.0e-115 421.4 277 71.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.0e-115 421.4 480 50.4
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 3.8e-115 419.5 273 71.4
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 7.4e-111 405.2 482 45.9
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 3.1e-109 399.8 273 67.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.2e-108 397.9 568 45.6
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 2.9e-107 393.3 269 65.1
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 7.2e-106 388.7 276 66.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.2e-105 387.9 268 68.3
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 8.0e-105 385.2 266 67.7
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.0e-104 384.8 266 66.2
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.4e-104 384.4 506 42.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 4.0e-104 382.9 280 65.0
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 8.8e-104 381.7 281 63.7
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.5e-103 380.9 259 68.0
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.1e-101 374.8 265 63.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 2.4e-101 373.6 471 47.1
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-100 371.3 269 65.8
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 6.5e-99 365.5 270 64.4
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.2e-98 363.2 266 62.8
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 4.2e-98 362.8 285 62.1
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 5.5e-98 362.5 281 59.1
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.5e-95 354.4 523 41.9
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 2.0e-92 344.0 536 42.4
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.9e-90 337.4 229 70.7
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 3.6e-89 333.2 263 60.5
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.2e-86 323.9 247 62.3
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 5.9e-84 315.8 294 51.4
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.3e-83 313.9 268 57.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.4e-80 304.7 193 73.6
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.3e-78 295.4 177 76.3
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.0e-76 290.8 282 53.5
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-74 284.6 277 53.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.8e-71 271.9 272 52.2
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.9e-69 267.7 188 65.4
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.5e-58 230.7 207 65.2
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.3e-58 229.9 219 52.5
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-56 225.3 270 46.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.4e-56 224.2 270 45.2
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 6.8e-56 222.6 174 58.6
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.7e-51 208.0 136 69.1
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-50 204.9 270 43.0
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.4e-48 197.6 133 66.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 7.1e-45 186.0 272 46.0
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 7.8e-44 182.6 253 41.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.0e-43 182.2 304 36.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 1.0e-43 182.2 287 44.3
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.1e-40 172.2 136 60.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-40 171.8 99 77.8
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.0e-39 167.9 291 36.1
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.3e-38 165.2 294 36.7
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 4.8e-33 146.7 282 39.7
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.9e-32 142.9 166 47.6
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 6.5e-30 136.3 98 65.3
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.5e-29 133.3 284 31.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.9e-27 127.1 119 52.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.9e-27 127.1 78 73.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.5e-26 124.4 293 31.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 3.3e-18 97.4 258 36.4
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 9.4e-13 79.3 86 46.5
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-12 79.0 59 52.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 7.9e-12 76.3 135 52.6
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 5.7e-10 70.1 137 35.8
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.1e-08 65.9 67 49.3
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-08 65.1 65 49.2
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.1e-08 64.3 104 34.6
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.7e-07 59.7 37 64.9


User provided reference genes

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