Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0002511 Rosa chinensis HOM05D002014 ORTHO05D001958 2.1e-50 202.6 147 100.0
RcHm_v2.0_Chr5g0002521 Rosa chinensis HOM05D002014 ORTHO05D001958 2.1e-50 202.6 147 100.0
FAN21G0073 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.0e-33 145.6 138 81.2
FAN25G1699 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.3e-25 119.4 90 74.4
FvH4_3g01672 Fragaria vesca HOM05D002014 ORTHO05D001958 4.1e-22 108.6 148 66.9
RcHm_v2.0_Chr4g0430681 Rosa chinensis HOM05D002014 ORTHO05D001958 1.2e-21 107.1 163 62.0
FAN20G2181 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.5e-19 99.4 100 61.0
FAN24G0143 Fragaria x ananassa HOM05D002014 ORTHO05D001958 5.5e-19 98.2 100 61.0
FvH4_3g01670 Fragaria vesca HOM05D002014 ORTHO05D001958 1.6e-18 96.7 150 62.7
RcHm_v2.0_Chr4g0430691 Rosa chinensis HOM05D002014 ORTHO05D001958 1.6e-18 96.7 108 55.6
FvH4_2g01120 Fragaria vesca HOM05D002014 ORTHO05D001958 1.0e-17 94.0 100 59.0
Prupe.4G017200 Prunus persica HOM05D002014 ORTHO05D001958 2.3e-17 92.8 166 55.4
RcHm_v2.0_Chr5g0002451 Rosa chinensis HOM05D002014 ORTHO05D001958 4.0e-17 92.0 108 54.6
RcHm_v2.0_Chr5g0002461 Rosa chinensis HOM05D002014 ORTHO05D001958 5.2e-17 91.7 108 52.8
MD10G1325000 Malus domestica HOM05D002014 ORTHO05D001958 1.5e-16 90.1 156 57.1
MD10G1325200 Malus domestica HOM05D002014 ORTHO05D001958 2.2e-15 86.3 106 50.9
Duzib235G0547 Durio zibethinus HOM05D002014 ORTHO05D001958 3.7e-15 85.5 101 50.5
MD07G1060300 Malus domestica HOM05D002014 ORTHO05D001958 6.3e-15 84.7 106 50.9
MD10G1325100 Malus domestica HOM05D002014 ORTHO05D001958 1.4e-14 83.6 106 50.9
Prupe.4G020300 Prunus persica HOM05D002014 ORTHO05D001958 9.2e-14 80.9 96 55.2
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 9.2e-14 80.9 105 48.6
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 1.2e-13 80.5 108 46.3
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 1.0e-12 77.4 108 45.4
Thecc.06G225300 Theobroma cacao HOM05D002014 ORTHO05D001958 1.0e-12 77.4 110 44.5
Prupe.4G017000 Prunus persica HOM05D002014 ORTHO05D001958 1.7e-12 76.6 106 47.2
COL.COLO4_31812 Corchorus olitorius HOM05D002014 ORTHO05D001958 2.9e-12 75.9 100 47.0
Duzib235G0137 Durio zibethinus HOM05D002014 ORTHO05D001958 2.9e-12 75.9 97 47.4
Actinidia26893 Actinidia chinensis HOM05D000131 ORTHO05D000086 5.0e-12 75.1 108 44.4
Potri.004G007000 Populus trichocarpa HOM05D002014 ORTHO05D001958 6.6e-12 74.7 103 49.5
QL05p072432 Quercus lobata HOM05D002014 ORTHO05D001958 8.6e-12 74.3 86 50.0
QL12p029974 Quercus lobata HOM05D002014 ORTHO05D001958 8.6e-12 74.3 86 50.0
Thecc.06G225500 Theobroma cacao HOM05D002014 ORTHO05D001958 8.6e-12 74.3 110 42.7
Dinv13928 Davidia involucrata HOM05D002014 ORTHO05D001958 1.5e-11 73.6 104 47.1
Glyma.15G110600 Glycine max HOM05D002014 ORTHO05D001958 1.9e-11 73.2 99 46.5
Potri.004G007200 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.5e-11 72.8 105 45.7
Manes.16G003600 Manihot esculenta HOM05D002014 ORTHO05D001958 3.3e-11 72.4 110 42.7
QL05p072457 Quercus lobata HOM05D002014 ORTHO05D001958 3.3e-11 72.4 99 47.5
Sabra04G0003900 Salix brachista HOM05D002014 ORTHO05D001958 4.3e-11 72.0 101 47.5
Potri.011G008932 Populus trichocarpa HOM05D002014 ORTHO05D001958 5.6e-11 71.6 105 44.8
Gorai.009G180900 Gossypium raimondii HOM05D002014 ORTHO05D001958 7.3e-11 71.2 99 38.4
Sabra11G0009000 Salix brachista HOM05D002014 ORTHO05D012114 9.5e-11 70.9 88 45.5
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 1.6e-10 70.1 96 42.7
Dinv20086 Davidia involucrata HOM05D002014 ORTHO05D001958 2.1e-10 69.7 110 43.6
Dinv20087 Davidia involucrata HOM05D000131 ORTHO05D000086 2.1e-10 69.7 110 43.6
Lj6C73T1 Lonicera japonica HOM05D002014 ORTHO05D001958 2.1e-10 69.7 92 43.5
Lj6C9T0 Lonicera japonica HOM05D002014 ORTHO05D001958 2.1e-10 69.7 92 43.5
Gohir.D05G175500 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.8e-10 69.3 99 37.4
Potri.011G008804 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.8e-10 69.3 104 46.2
Potri.011G009000 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.8e-10 69.3 104 46.2
CSS0009792 Camellia sinensis var. sinensis HOM05D002014 ORTHO05D001958 3.6e-10 68.9 96 45.8
CiPaw.09G096000 Carya illinoinensis HOM05D002014 ORTHO05D001958 3.6e-10 68.9 112 40.2
Potri.004G030900 Populus trichocarpa HOM05D002014 ORTHO05D001958 3.6e-10 68.9 103 40.8
Glyma.09G006200 Glycine max HOM05D002014 ORTHO05D001958 6.1e-10 68.2 99 42.4
CiPaw.09G095900 Carya illinoinensis HOM05D002014 ORTHO05D001958 8.0e-10 67.8 112 40.2
Phvul.006G147200 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 1.0e-09 67.4 99 44.4
QL12p029986 Quercus lobata HOM05D002014 ORTHO05D001958 1.0e-09 67.4 105 41.9
arahy.Tifrunner.gnm1.ann1.RRTI1V Arachis hypogaea HOM05D002014 ORTHO05D001958 1.4e-09 67.0 96 43.8
CANSAT56G2270 Cannabis sativa HOM05D002014 ORTHO05D001958 1.4e-09 67.0 94 43.6
Gohir.A05G172300 Gossypium hirsutum HOM05D002014 ORTHO05D001958 1.4e-09 67.0 101 38.6
Potri.011G009100 Populus trichocarpa HOM05D002014 ORTHO05D001958 1.8e-09 66.6 105 44.8
TAR624G0852 Trochodendron aralioides HOM05D002014 ORTHO05D001958 1.8e-09 66.6 107 43.9
Actinidia11865 Actinidia chinensis HOM05D000131 ORTHO05D000086 2.3e-09 66.2 92 41.3
Ciclev10023606m.g Citrus clementina HOM05D002014 ORTHO05D001958 2.3e-09 66.2 108 38.9
Gohir.A05G172400 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.3e-09 66.2 99 36.4
Nn5g28102 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.3e-09 66.2 110 40.9
RcHm_v2.0_Chr5g0030071 Rosa chinensis HOM05D002014 ORTHO05D001958 2.3e-09 66.2 93 43.0
arahy.Tifrunner.gnm1.ann1.HIXG1Y Arachis hypogaea HOM05D002014 ORTHO05D001958 3.1e-09 65.9 96 42.7
Ciclev10018080m.g Citrus clementina HOM05D002014 ORTHO05D001958 3.1e-09 65.9 92 42.4
TAR626G0649 Trochodendron aralioides HOM05D002014 ORTHO05D001958 3.1e-09 65.9 95 44.2
Haze_06833 Corylus avellana HOM05D002014 ORTHO05D001958 4.0e-09 65.5 113 40.7
Haze_06838 Corylus avellana HOM05D002014 ORTHO05D001958 4.0e-09 65.5 113 40.7
Dinv20088 Davidia involucrata HOM05D002014 ORTHO05D001958 4.0e-09 65.5 93 45.2
CiPaw.09G095700 Carya illinoinensis HOM05D002014 ORTHO05D001958 5.2e-09 65.1 112 39.3
Dinv20093 Davidia involucrata HOM05D002014 ORTHO05D001958 5.2e-09 65.1 93 44.1
Potri.004G007100 Populus trichocarpa HOM05D002014 ORTHO05D001958 5.2e-09 65.1 103 40.8
Gorai.009G180800 Gossypium raimondii HOM05D002014 ORTHO05D001958 8.9e-09 64.3 100 38.0
Cfa000182 Carpinus fangiana HOM05D002014 ORTHO05D001958 2.0e-08 63.2 115 40.0
FvH4_3g01660 Fragaria vesca HOM05D002014 ORTHO05D001958 2.0e-08 63.2 95 42.1
Lj6C72G5 Lonicera japonica HOM05D002014 ORTHO05D001958 2.0e-08 63.2 87 41.4
arahy.Tifrunner.gnm1.ann1.J355LQ Arachis hypogaea HOM05D002014 ORTHO05D001958 2.6e-08 62.8 96 39.6
FvH4_3g18030 Fragaria vesca HOM05D002014 ORTHO05D001958 2.6e-08 62.8 91 40.7
FAN25G0379 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.6e-08 62.8 95 42.1
Gohir.D05G175400 Gossypium hirsutum HOM05D002014 ORTHO05D001958 2.6e-08 62.8 100 37.0
Lj6C71T2 Lonicera japonica HOM05D002014 ORTHO05D001958 2.6e-08 62.8 87 41.4
Lj6C74T0 Lonicera japonica HOM05D002014 ORTHO05D001958 2.6e-08 62.8 87 41.4
Manes.16G003700 Manihot esculenta HOM05D002014 ORTHO05D001958 2.6e-08 62.8 109 39.4
Nn1g07226 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.6e-08 62.8 111 39.6
Potri.004G006800 Populus trichocarpa HOM05D002014 ORTHO05D001958 2.6e-08 62.8 92 35.9
Prupe.4G017300 Prunus persica HOM05D002014 ORTHO05D001958 2.6e-08 62.8 100 42.0
FAN11G3522 Fragaria x ananassa HOM05D002014 ORTHO05D001958 4.4e-08 62.0 91 39.6
Prupe.4G020700 Prunus persica HOM05D002014 ORTHO05D001958 5.8e-08 61.6 100 42.0
COL.COLO4_31810 Corchorus olitorius HOM05D002014 ORTHO05D001958 9.8e-08 60.8 93 45.2
Hma1.2p1_0298F.1_g117580 Hydrangea macrophylla HOM05D002014 ORTHO05D001958 9.8e-08 60.8 93 45.2
Nn1g07227 Nelumbo nucifera HOM05D002014 ORTHO05D001958 9.8e-08 60.8 115 34.8
FvH4_3g01640 Fragaria vesca HOM05D002014 ORTHO05D001958 1.3e-07 60.5 103 36.9
Lsat_1_v5_gn_7_15460 Lactuca sativa HOM05D002014 ORTHO05D001958 1.3e-07 60.5 99 39.4
MD05G1350300 Malus domestica HOM05D002014 ORTHO05D001958 1.3e-07 60.5 59 52.5
Nn5g28113 Nelumbo nucifera HOM05D002014 ORTHO05D001958 1.3e-07 60.5 115 36.5
PGR042G1145 Punica granatum HOM05D002014 ORTHO05D001958 1.3e-07 60.5 103 40.8
RcHm_v2.0_Chr5g0002431 Rosa chinensis HOM05D002014 ORTHO05D001958 1.3e-07 60.5 103 36.9
FvH4_2g01130 Fragaria vesca HOM05D022457 ORTHO05D024915 1.7e-07 60.1 115 35.7
Cfa000183 Carpinus fangiana HOM05D002014 ORTHO05D001958 2.2e-07 59.7 99 42.4
Nn1g07228 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.2e-07 59.7 88 40.9
Nitab4.5_0001409g0100 Nicotiana tabacum HOM05D002014 ORTHO05D001958 2.2e-07 59.7 114 33.3
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 2.9e-07 59.3 96 38.5
FAN25G2113 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.9e-07 59.3 103 36.9
CiPaw.10G073600 Carya illinoinensis HOM05D002014 ORTHO05D001958 3.7e-07 58.9 94 44.7
Sabra04G0003800 Salix brachista HOM05D002014 ORTHO05D001958 3.7e-07 58.9 94 40.4
Haze_06834 Corylus avellana HOM05D002014 ORTHO05D001958 4.9e-07 58.5 92 38.0
Migut.M01346 Erythranthe guttata HOM05D002014 ORTHO05D001958 4.9e-07 58.5 114 40.4
Lj6g0008980 Lotus japonicus HOM05D002014 ORTHO05D001958 4.9e-07 58.5 102 41.2
FAN24G3582 Fragaria x ananassa HOM05D002014 ORTHO05D024915 6.4e-07 58.2 51 58.8
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 6.4e-07 58.2 75 38.7
Nn5g27689 Nelumbo nucifera HOM05D002014 ORTHO05D001958 6.4e-07 58.2 57 50.9
Oeu016058.1 Olea europaea HOM05D002014 ORTHO05D001958 6.4e-07 58.2 102 40.2
Sabra04G0003600 Salix brachista HOM05D002014 ORTHO05D001958 6.4e-07 58.2 83 37.3
Solyc02g080930.3 Solanum lycopersicum HOM05D002014 ORTHO05D001958 6.4e-07 58.2 115 30.4
Eucgr.E04009 Eucalyptus grandis HOM05D002014 ORTHO05D001958 8.3e-07 57.8 148 46.6
Potri.004G031000 Populus trichocarpa HOM05D002014 ORTHO05D001958 8.3e-07 57.8 97 36.1
Prupe.4G016900 Prunus persica HOM05D002014 ORTHO05D001958 8.3e-07 57.8 103 39.8
Prupe.4G017100 Prunus persica HOM05D002014 ORTHO05D001958 8.3e-07 57.8 57 56.1
Sabra11G0007100 Salix brachista HOM05D002014 ORTHO05D001958 8.3e-07 57.8 101 39.6
arahy.Tifrunner.gnm1.ann1.RI9N4Q Arachis hypogaea HOM05D002014 ORTHO05D001958 1.1e-06 57.4 90 37.8
COL.COLO4_31814 Corchorus olitorius HOM05D002014 ORTHO05D001958 1.1e-06 57.4 95 37.9
Eucgr.E04008 Eucalyptus grandis HOM05D002014 ORTHO05D001958 1.1e-06 57.4 35 65.7
Gohir.A05G172200 Gossypium hirsutum HOM05D002014 ORTHO05D001958 1.1e-06 57.4 102 39.2
MD07G1060200 Malus domestica HOM05D002014 ORTHO05D001958 1.1e-06 57.4 87 40.2
MD10G1325300 Malus domestica HOM05D002014 ORTHO05D001958 1.1e-06 57.4 87 40.2
Manes.16G003800 Manihot esculenta HOM05D002014 ORTHO05D001958 1.1e-06 57.4 109 37.6
Nitab4.5_0004743g0090 Nicotiana tabacum HOM05D002014 ORTHO05D001958 1.1e-06 57.4 93 39.8
ClCG03G004450 Citrullus lanatus HOM05D002014 ORTHO05D001958 1.4e-06 57.0 36 66.7
CsaV3_1G010450 Cucumis sativus L. HOM05D002014 ORTHO05D001958 1.4e-06 57.0 57 54.4
Lsat_1_v5_gn_7_15400 Lactuca sativa HOM05D002014 ORTHO05D001958 1.4e-06 57.0 95 38.9
Lsat_1_v5_gn_1_129340 Lactuca sativa HOM05D002014 ORTHO05D001958 1.9e-06 56.6 98 36.7
Lj6g0024439 Lotus japonicus HOM05D002014 ORTHO05D001958 1.9e-06 56.6 102 35.3
Thecc.06G225900 Theobroma cacao HOM05D002014 ORTHO05D001958 1.9e-06 56.6 59 45.8
Aqoxy4G01348 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 2.4e-06 56.2 78 35.9
Aqoxy4G01491 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 2.4e-06 56.2 78 35.9
A09p64180 Brassica napus HOM05D002014 ORTHO05D001958 2.4e-06 56.2 39 56.4
COL.COLO4_21132 Corchorus olitorius HOM05D002014 ORTHO05D001958 2.4e-06 56.2 91 38.5
MELO3C002433.2 Cucumis melo HOM05D002014 ORTHO05D001958 2.4e-06 56.2 58 53.4
Gorai.009G180600 Gossypium raimondii HOM05D002014 ORTHO05D001958 2.4e-06 56.2 102 39.2
HanXRQChr15g0470481 Helianthus annuus HOM05D002014 ORTHO05D001958 2.4e-06 56.2 94 40.4
A06p09490 Brassica napus HOM05D002014 ORTHO05D001958 3.2e-06 55.8 101 35.6
C05p11210 Brassica napus HOM05D002014 ORTHO05D001958 3.2e-06 55.8 101 35.6
BolC5t29869H Brassica oleracea HOM05D002014 ORTHO05D001958 3.2e-06 55.8 101 35.6
BraA06t24139Z Brassica rapa HOM05D002014 ORTHO05D001958 3.2e-06 55.8 101 35.6
Cpa.g.sc152.40 Carica papaya HOM05D002014 ORTHO05D001958 3.2e-06 55.8 110 33.6
Cfa000181 Carpinus fangiana HOM05D002014 ORTHO05D001958 3.2e-06 55.8 100 34.0
HanXRQChr01g0006441 Helianthus annuus HOM05D002014 ORTHO05D001958 3.2e-06 55.8 91 36.3
SalBow8G4319 Salvia bowleyana HOM05D002014 ORTHO05D001958 3.2e-06 55.8 54 51.9
Aqoxy4G01347 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 4.1e-06 55.5 74 39.2
Aqoxy4G01492 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 4.1e-06 55.5 99 36.4
arahy.Tifrunner.gnm1.ann1.F8BHXP Arachis hypogaea HOM05D002014 ORTHO05D001958 4.1e-06 55.5 85 40.0
A09p64210 Brassica napus HOM05D002014 ORTHO05D001958 4.1e-06 55.5 101 36.6
C08p47810 Brassica napus HOM05D002014 ORTHO05D001958 4.1e-06 55.5 101 36.6
BraA09t41764Z Brassica rapa HOM05D002014 ORTHO05D001958 4.1e-06 55.5 101 36.6
Duzib160G0758 Durio zibethinus HOM05D002014 ORTHO05D001958 4.1e-06 55.5 91 41.8
Gohir.D05G175200 Gossypium hirsutum HOM05D002014 ORTHO05D001958 4.1e-06 55.5 99 38.4
Lj5P713T17 Lonicera japonica HOM05D002014 ORTHO05D001958 4.1e-06 55.5 36 61.1
Phvul.006G147300 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 4.1e-06 55.5 59 44.1
Solyc02g036220.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 4.1e-06 55.5 99 36.4
VMungo0540G0699 Vigna mungo HOM05D002014 ORTHO05D001958 4.1e-06 55.5 59 47.5
Gorai.009G180500 Gossypium raimondii HOM05D002014 ORTHO05D001958 5.4e-06 55.1 99 38.4
MD05G1350500 Malus domestica HOM05D002014 ORTHO05D001958 5.4e-06 55.1 78 42.3
Psat1g178680 Pisum sativum HOM05D002014 ORTHO05D001958 5.4e-06 55.1 92 35.9
QL05p072420 Quercus lobata HOM05D002014 ORTHO05D001958 5.4e-06 55.1 83 62.7
RcHm_v2.0_Chr5g0002441 Rosa chinensis HOM05D002014 ORTHO05D001958 5.4e-06 55.1 55 49.1
Lj6g0003684 Lotus japonicus HOM05D002014 ORTHO05D001958 7.0e-06 54.7 93 36.6
Lj6g0005865 Lotus japonicus HOM05D002014 ORTHO05D001958 7.0e-06 54.7 94 37.2
Prupe.4G218600 Prunus persica HOM05D002014 ORTHO05D001958 7.0e-06 54.7 97 34.0
Rhsim13G0151700 Rhododendron simsii HOM05D002014 ORTHO05D001958 7.0e-06 54.7 95 34.7
Sed0026633 Sechium edule HOM05D002014 ORTHO05D001958 7.0e-06 54.7 99 34.3
Aqoxy3G01944 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 9.2e-06 54.3 99 37.4
arahy.Tifrunner.gnm1.ann1.WJ6Y4Y Arachis hypogaea HOM05D002014 ORTHO05D001958 9.2e-06 54.3 65 43.1
BcaC05g25238 Brassica carinata HOM05D002014 ORTHO05D001958 9.2e-06 54.3 101 35.6
ECA236G0221 Erigeron canadensis HOM05D002014 ORTHO05D001958 9.2e-06 54.3 67 41.8
Gohir.A05G172151 Gossypium hirsutum HOM05D002014 ORTHO05D001958 9.2e-06 54.3 99 38.4
Sabra04G0004000 Salix brachista HOM05D002014 ORTHO05D001958 9.2e-06 54.3 110 37.3


User provided reference genes

Program Settings