Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.7e-165 585.9 279 100.0
FAN11G2796 Fragaria x ananassa HOM05D037889 ORTHO05D029379 1.3e-37 161.0 202 45.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 1.1e-23 114.8 297 27.6
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 3.2e-23 113.2 298 28.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 1.6e-22 110.9 244 29.9
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.6e-22 110.9 243 29.6
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 2.0e-22 110.5 243 29.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.0e-22 110.5 243 29.6
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 2.0e-22 110.5 243 29.6
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 2.7e-22 110.2 288 27.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 1.0e-21 108.2 243 29.6
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.3e-21 107.8 248 27.8
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 1.3e-21 107.8 243 27.6
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 1.7e-21 107.5 277 27.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.7e-21 107.5 277 27.4
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.7e-21 107.5 277 27.4
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 1.7e-21 107.5 307 29.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 1.7e-21 107.5 270 28.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.7e-21 107.5 244 30.3
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.7e-21 107.5 244 29.5
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.7e-21 107.5 244 29.9
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 1.7e-21 107.5 293 27.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 2.3e-21 107.1 248 27.8
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-21 107.1 241 29.9
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-21 107.1 241 29.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-21 107.1 241 29.9
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-21 107.1 241 29.9
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 3.0e-21 106.7 301 26.6
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 3.0e-21 106.7 296 26.4
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 3.9e-21 106.3 277 27.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 3.9e-21 106.3 310 28.1
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 5.0e-21 105.9 277 27.4
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 5.0e-21 105.9 288 27.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 6.6e-21 105.5 248 28.2
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 8.6e-21 105.1 284 28.2
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 8.6e-21 105.1 244 29.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 8.6e-21 105.1 248 29.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 1.1e-20 104.8 280 27.5
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 1.1e-20 104.8 280 27.5
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 1.5e-20 104.4 250 29.2
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 1.9e-20 104.0 244 27.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 2.5e-20 103.6 244 27.0
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 2.5e-20 103.6 257 26.5
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 2.5e-20 103.6 244 29.1
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 2.5e-20 103.6 244 29.9
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 4.3e-20 102.8 243 25.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 4.3e-20 102.8 281 27.8
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 4.3e-20 102.8 248 28.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 4.3e-20 102.8 296 26.7
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 4.3e-20 102.8 296 26.7
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 4.3e-20 102.8 277 27.4
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 5.6e-20 102.4 248 27.4
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 5.6e-20 102.4 296 28.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 5.6e-20 102.4 291 27.1
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.3e-20 102.1 244 28.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 7.3e-20 102.1 293 27.0
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 7.3e-20 102.1 257 27.6
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 7.3e-20 102.1 244 28.3
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 9.5e-20 101.7 294 27.2
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 9.5e-20 101.7 244 28.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 1.2e-19 101.3 293 27.3
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 1.2e-19 101.3 243 26.3
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 1.2e-19 101.3 305 26.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 1.2e-19 101.3 293 26.6
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.6e-19 100.9 248 27.4
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 1.6e-19 100.9 244 28.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 1.6e-19 100.9 244 28.7
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 2.1e-19 100.5 244 28.7
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 3.6e-19 99.8 282 26.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.6e-19 99.8 242 28.5
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.7e-19 99.4 277 27.1
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 4.7e-19 99.4 294 25.5
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 6.2e-19 99.0 244 27.0
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 6.2e-19 99.0 245 28.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 8.1e-19 98.6 244 27.5
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 8.1e-19 98.6 244 27.9
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 8.1e-19 98.6 244 27.9
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.1e-18 98.2 244 27.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-18 98.2 257 26.5
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 1.1e-18 98.2 248 27.8
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 1.8e-18 97.4 305 27.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-18 97.4 244 27.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.8e-18 97.4 244 27.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.3e-18 97.1 255 27.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 2.3e-18 97.1 303 23.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 4.0e-18 96.3 244 28.3
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 4.0e-18 96.3 244 26.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 5.2e-18 95.9 246 27.6
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.2e-17 94.7 244 26.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 1.5e-17 94.4 282 25.9
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 1.5e-17 94.4 260 25.0
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 2.6e-17 93.6 244 27.5
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 3.4e-17 93.2 248 25.4
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 4.4e-17 92.8 297 26.3
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 5.8e-17 92.4 282 25.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 7.5e-17 92.0 227 28.6
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 1.3e-16 91.3 248 27.0
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 1.7e-16 90.9 244 27.0
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 2.2e-16 90.5 302 24.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 2.2e-16 90.5 244 27.5
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 1.1e-15 88.2 243 25.1
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 1.4e-15 87.8 292 26.0
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 3.2e-15 86.7 293 23.2
FAN12G1464 Fragaria x ananassa HOM05D037889 ORTHO05D029379 1.6e-14 84.3 69 53.6
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 6.6e-13 79.0 259 23.6
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.1e-12 78.2 293 23.5
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 1.1e-12 78.2 306 24.2
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.1e-12 78.2 286 22.4
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 4.3e-12 76.3 271 25.1
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 5.6e-12 75.9 201 26.9
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.1e-11 73.9 255 24.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 2.6e-09 67.0 200 24.5


User provided reference genes

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