Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 7.5e-86 320.5 160 100.0
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.1e-64 249.2 160 81.2
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.9e-60 236.1 162 79.0
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 9.6e-33 144.1 172 55.8
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 3.3e-25 119.0 177 48.6
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 9.6e-25 117.5 177 47.5
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 4.0e-23 112.1 171 49.7
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.6e-19 100.1 176 39.8
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.7e-16 89.0 158 40.5
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.8e-15 86.7 161 44.7
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.2e-14 84.0 154 39.0
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 1.2e-14 84.0 158 41.8
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.6e-14 82.8 160 41.2
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 3.4e-14 82.4 158 41.8
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 4.5e-14 82.0 161 38.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 5.8e-14 81.6 164 40.2
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 2.9e-13 79.3 154 37.7
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 8.4e-13 77.8 158 40.5
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 8.4e-13 77.8 156 41.7
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.1e-12 77.4 158 40.5
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 3.2e-12 75.9 166 40.4
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 4.2e-12 75.5 165 38.8
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 4.2e-12 75.5 156 35.9
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 5.5e-12 75.1 158 39.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.5e-12 75.1 161 37.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 5.5e-12 75.1 164 39.0
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 5.5e-12 75.1 160 40.0
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 7.1e-12 74.7 160 41.2
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.2e-11 73.9 165 38.2
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 1.6e-11 73.6 166 41.0
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.6e-11 73.6 166 41.0
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.7e-11 72.8 160 40.0
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.7e-11 72.8 159 41.5
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 3.5e-11 72.4 156 39.7
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 4.6e-11 72.0 156 39.1
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 7.9e-11 71.2 161 38.5
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.8e-10 70.1 170 34.7
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 1.8e-10 70.1 159 42.1
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 3.0e-10 69.3 141 37.6
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 3.0e-10 69.3 159 38.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.9e-10 68.9 165 36.4
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 3.9e-10 68.9 160 40.0
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.7e-10 68.2 169 39.1
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.7e-10 68.2 169 39.1
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 6.7e-10 68.2 160 36.2
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.7e-10 68.2 153 35.9
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.1e-09 67.4 169 39.6
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 1.1e-09 67.4 160 36.9
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.9e-09 66.6 111 38.7
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 2.5e-09 66.2 165 34.5
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.3e-09 65.9 170 38.2
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.3e-09 65.9 163 38.0
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 4.3e-09 65.5 162 35.8
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 4.3e-09 65.5 165 35.8
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 5.7e-09 65.1 160 37.5
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 5.7e-09 65.1 161 35.4
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.7e-09 65.1 155 34.2
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 7.4e-09 64.7 160 36.9
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 7.4e-09 64.7 149 36.9
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 3.7e-08 62.4 156 34.0
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 6.3e-08 61.6 149 37.6
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.1e-07 60.8 162 38.9
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.8e-07 60.1 153 36.6
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.8e-07 60.1 159 35.2
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-07 59.7 158 36.1
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 4.1e-07 58.9 169 36.7
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.9e-07 58.2 160 39.4
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 9.0e-07 57.8 160 35.0
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.0e-07 57.8 155 31.6
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.2e-06 57.4 160 35.6
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-06 57.0 149 36.2
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-06 57.0 155 34.2
Sc17g0007950 Simmondsia chinensis HOM05D004793 ORTHO05D004423 1.5e-06 57.0 177 33.3
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.0e-06 56.6 160 35.6
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.0e-06 56.6 160 35.6
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 2.6e-06 56.2 148 33.8
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 2.6e-06 56.2 148 33.8
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.6e-06 56.2 153 35.3
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 3.4e-06 55.8 158 34.8
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.5e-06 55.5 160 36.9
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 4.5e-06 55.5 162 34.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.9e-06 55.1 156 37.8
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 5.9e-06 55.1 165 35.2
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 7.7e-06 54.7 75 48.0
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 7.7e-06 54.7 156 34.0
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 7.7e-06 54.7 151 33.8
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.0e-05 54.3 149 36.2


User provided reference genes

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