Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 3.2e-242 841.3 405 100.0
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 3.4e-204 714.9 405 85.2
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.2e-200 701.0 405 84.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 8.5e-187 657.1 428 74.5
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 6.8e-184 647.5 441 72.3
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 2.0e-180 636.0 409 74.6
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.5e-180 635.2 410 74.4
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.3e-179 632.5 412 73.3
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 2.3e-179 632.5 408 73.8
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 8.6e-179 630.6 417 71.7
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 8.6e-179 630.6 410 72.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.1e-178 630.2 410 73.2
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.5e-178 629.0 408 74.0
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 7.2e-178 627.5 409 74.8
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 9.5e-178 627.1 412 72.6
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.6e-177 626.3 412 71.8
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.1e-177 625.9 407 71.5
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.1e-177 625.9 411 73.0
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.8e-177 625.5 411 73.5
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 3.6e-177 625.2 416 71.2
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.7e-177 624.8 410 72.4
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 2.3e-176 622.5 411 73.2
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 2.3e-176 622.5 410 73.2
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 6.8e-176 620.9 414 70.8
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 8.8e-176 620.5 410 72.0
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.4e-175 618.6 416 70.9
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 3.4e-175 618.6 410 72.0
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 7.5e-175 617.5 407 72.0
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 8.3e-174 614.0 415 70.4
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.8e-173 612.8 407 71.3
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 5.4e-173 611.3 412 70.4
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 5.4e-173 611.3 415 69.9
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 9.2e-173 610.5 410 70.5
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 9.2e-173 610.5 411 69.8
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-172 609.4 404 70.8
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.7e-172 609.0 410 70.2
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.7e-172 609.0 410 70.2
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 2.7e-172 609.0 408 70.1
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.5e-172 608.6 406 71.7
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.3e-171 606.7 417 70.0
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.3e-171 606.7 411 69.6
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.9e-171 605.5 411 70.3
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.5e-170 603.2 407 69.8
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.5e-170 602.4 411 70.1
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.3e-170 602.1 412 70.1
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 4.3e-170 601.7 409 70.9
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 9.5e-170 600.5 413 69.5
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 2.1e-169 599.4 407 69.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.8e-169 599.0 412 70.1
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.1e-169 597.8 418 69.4
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.1e-169 597.8 418 69.1
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.0e-168 597.0 412 69.9
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 1.4e-168 596.7 408 68.6
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.0e-167 592.8 405 67.4
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 3.4e-167 592.0 415 66.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 5.7e-167 591.3 408 67.4
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 7.5e-167 590.9 412 68.7
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 8.3e-166 587.4 410 67.8
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.8e-165 586.3 412 67.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.2e-165 585.5 410 67.6
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 4.1e-165 585.1 411 68.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 5.4e-165 584.7 418 67.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 5.4e-165 584.7 407 68.3
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 7.0e-165 584.3 407 66.1
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 2.0e-164 582.8 415 65.8
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 4.6e-164 581.6 414 65.2
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 4.6e-164 581.6 412 67.0
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 5.9e-164 581.3 419 66.3
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 5.9e-164 581.3 416 67.3
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.0e-163 580.5 414 66.4
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.3e-163 580.1 408 67.2
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.7e-163 579.7 418 65.6
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.7e-163 579.7 416 67.3
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.7e-163 579.7 419 65.4
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 3.0e-163 578.9 418 65.3
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-163 578.6 418 65.3
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 5.0e-163 578.2 414 65.9
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 6.6e-163 577.8 414 65.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 8.6e-163 577.4 409 66.0
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.5e-162 576.6 418 65.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.5e-162 576.6 408 66.7
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 4.3e-162 575.1 414 65.7
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 5.6e-162 574.7 414 65.7
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-161 573.5 409 66.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.2e-161 573.5 409 66.5
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 4.7e-161 571.6 418 64.4
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 8.0e-161 570.9 414 65.2
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-160 569.7 414 64.5
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.8e-160 569.7 414 64.7
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 5.2e-160 568.2 414 64.5
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-159 567.0 414 65.5
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.2e-159 567.0 414 65.5
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.3e-158 563.5 417 65.7
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.3e-158 563.5 408 66.4
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.0e-157 557.8 416 65.9
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 3.5e-156 555.4 413 62.7
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.6e-153 545.4 418 62.7
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.0e-152 542.0 414 60.6
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 8.9e-152 540.8 408 64.0
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.0e-151 539.7 407 61.7
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.4e-151 538.9 418 63.4
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.2e-150 536.2 407 61.2
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 9.2e-149 530.8 408 61.8
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 4.6e-148 528.5 394 64.5
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 7.3e-146 521.2 410 62.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.1e-145 519.6 407 60.7
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.7e-145 518.5 410 59.5
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 3.1e-144 515.8 411 59.1
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.2e-143 513.8 410 57.3
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.0e-143 513.1 410 60.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.9e-142 509.2 414 60.4
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.9e-142 508.4 419 60.4
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 8.4e-142 507.7 410 56.3
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.4e-142 507.7 446 55.4
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.2e-140 503.8 412 56.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 6.9e-136 488.0 401 61.8
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.4e-135 485.7 409 56.5
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 9.9e-135 484.2 354 66.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.1e-128 462.6 392 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 3.9e-123 445.7 428 51.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.9e-114 416.8 406 49.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.3e-114 416.0 405 52.1
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 6.9e-112 408.3 305 63.0
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 3.8e-110 402.5 410 49.3
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.5e-106 389.8 403 53.3
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.4e-104 384.0 269 68.4
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.9e-104 381.7 343 51.6
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.5e-101 373.2 406 51.5
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 9.4e-101 371.3 294 59.5
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.1e-96 357.8 408 45.1
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 5.1e-91 339.0 240 69.6
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.2e-83 312.4 286 51.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 4.4e-82 309.3 223 64.1
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 3.7e-81 306.2 243 63.8
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.7e-54 217.6 150 65.3
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-53 214.5 301 40.2
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.9e-49 200.3 133 66.2
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.5e-47 193.4 156 65.4
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.6e-46 188.7 126 65.1
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 9.5e-45 185.3 165 55.8
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-42 177.9 145 60.0
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 3.0e-38 163.7 112 66.1
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-35 154.8 185 45.4
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.6e-34 150.6 126 57.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.9e-33 147.1 401 26.4
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-26 124.8 153 45.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-22 110.9 78 66.7
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.6e-22 109.4 79 63.3
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.2e-20 102.8 86 53.5
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 9.0e-19 99.0 66 69.7
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-18 98.2 83 54.2
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.9e-18 95.5 79 54.4
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.2e-16 90.1 145 35.9
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 3.0e-14 84.0 92 47.8
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-14 83.6 97 43.3
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.1e-13 82.0 65 61.5
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 7.3e-13 79.3 60 65.0
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 6.9e-11 72.8 39 82.1
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.3e-09 68.6 106 36.8
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-08 65.5 54 55.6
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 9.3e-08 62.4 76 36.8
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 3.0e-06 57.4 37 64.9
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 5.1e-06 56.6 41 61.0


User provided reference genes

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