Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 5.0e-205 717.6 381 100.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.5e-169 599.7 381 81.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.9e-146 521.2 380 77.9
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.8e-138 496.5 367 76.3
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 9.0e-130 467.6 410 67.8
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 3.5e-126 455.7 311 72.0
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 7.9e-126 454.5 380 65.5
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 9.7e-124 447.6 389 61.4
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 3.7e-123 445.7 389 61.4
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.7e-120 436.8 385 60.3
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.5e-119 433.0 388 63.1
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 9.4e-119 431.0 310 70.0
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.6e-118 430.3 383 60.3
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 6.1e-118 428.3 314 69.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.4e-117 427.2 310 70.0
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 3.0e-117 426.0 379 61.2
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 8.8e-117 424.5 287 72.8
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 3.3e-116 422.5 385 62.1
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.8e-115 419.5 319 68.0
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 8.2e-115 417.9 311 69.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 9.1e-114 414.5 295 70.8
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.2e-113 414.1 344 64.0
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.0e-113 413.3 389 60.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.4e-113 412.5 344 63.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 3.4e-113 412.5 375 59.5
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.5e-113 412.1 300 70.3
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.7e-112 410.2 387 57.6
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.2e-112 409.8 310 67.4
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 2.2e-112 409.8 326 66.3
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 2.5e-111 406.4 303 68.0
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.2e-111 406.0 362 62.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.2e-111 406.0 316 65.2
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 5.5e-111 405.2 319 65.2
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.1e-110 403.3 322 65.2
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.6e-110 402.5 292 70.9
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.0e-109 401.0 310 65.5
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.0e-109 401.0 318 66.7
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.0e-109 401.0 324 66.7
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 2.3e-109 399.8 319 65.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.0e-109 399.4 318 65.7
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 5.1e-109 398.7 356 59.3
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 5.1e-109 398.7 314 68.2
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 8.8e-109 397.9 385 57.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.1e-108 397.5 323 64.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.6e-108 396.4 317 65.9
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 2.6e-108 396.4 322 64.0
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.7e-107 393.7 385 57.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.8e-107 392.9 298 66.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 6.3e-107 391.7 304 67.8
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.1e-106 391.0 378 60.1
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.1e-106 389.4 295 67.5
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 3.1e-106 389.4 322 62.4
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 4.1e-106 389.0 321 64.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 7.0e-106 388.3 345 60.3
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.2e-105 387.5 302 66.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.0e-105 386.7 299 66.6
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.6e-105 386.3 279 68.5
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 4.5e-105 385.6 309 64.1
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 4.5e-105 385.6 302 66.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.2e-104 383.3 301 64.8
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.2e-104 383.3 324 62.7
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.2e-104 383.3 300 64.3
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 3.8e-104 382.5 310 61.9
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 3.8e-104 382.5 304 64.1
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 5.0e-104 382.1 301 64.8
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 6.5e-104 381.7 280 68.9
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 1.1e-103 380.9 245 78.4
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.4e-103 380.6 312 63.5
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.4e-103 380.6 309 63.4
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.4e-103 380.6 313 64.2
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 3.2e-103 379.4 302 65.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.2e-103 379.4 278 69.1
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 5.5e-103 378.6 323 62.8
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 5.5e-103 378.6 323 62.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 5.5e-103 378.6 275 69.5
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 9.4e-103 377.9 309 63.4
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.6e-102 377.1 301 64.5
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.6e-102 377.1 323 62.5
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.6e-102 377.1 323 62.5
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 2.1e-102 376.7 309 63.4
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 6.1e-102 375.2 303 62.7
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.1e-102 375.2 318 60.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.4e-101 374.0 284 66.2
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 8.8e-101 371.3 309 62.8
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 2.0e-100 370.2 300 64.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.0e-100 370.2 303 63.7
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.6e-100 369.8 311 60.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.3e-100 369.4 278 66.2
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 6.3e-99 365.2 319 59.9
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.8e-98 363.6 382 53.9
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.1e-98 362.8 297 64.6
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 3.1e-98 362.8 322 59.9
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.2e-97 360.9 294 62.6
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 5.9e-97 358.6 276 66.7
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 5.9e-97 358.6 431 49.0
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 8.5e-96 354.8 347 56.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.4e-93 347.4 328 56.7
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.5e-92 344.0 304 60.2
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.4e-92 342.4 324 57.7
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 3.7e-91 339.3 330 57.9
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 6.3e-91 338.6 282 60.3
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.2e-89 334.3 232 70.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.0e-89 333.6 246 67.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.0e-89 333.6 300 58.0
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.8e-88 329.3 298 57.0
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.9e-87 327.0 279 61.3
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 5.5e-87 325.5 389 50.1
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 2.1e-86 323.6 279 59.1
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.2e-84 317.8 282 58.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.7e-83 313.9 241 65.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 9.1e-82 308.1 282 57.1
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.6e-81 307.4 289 66.4
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.4e-74 282.3 261 56.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 8.3e-67 258.5 260 49.2
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.4e-66 257.7 283 47.0
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 7.8e-65 251.9 137 88.3
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 7.8e-65 251.9 309 48.9
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 2.3e-64 250.4 233 56.2
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.8e-62 243.4 190 60.0
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.2e-60 238.0 259 46.7
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 5.4e-42 176.0 149 55.0
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 8.7e-40 168.7 265 41.5
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.2e-34 150.2 142 57.7
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 7.9e-25 119.0 82 72.0
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 2.3e-24 117.5 98 66.3
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 3.7e-22 110.2 337 29.4
RcHm_v2.0_Chr5g0081501 Rosa chinensis HOM05D056344 ORTHO05D008157 1.2e-17 95.1 83 65.1
RcHm_v2.0_Chr7g0231651 Rosa chinensis HOM05D056344 ORTHO05D004689 1.2e-17 95.1 83 65.1
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.1e-13 80.5 47 78.7
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.4e-10 71.6 83 44.6


User provided reference genes

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