Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-73 280.0 150 100.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-69 264.2 150 92.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-68 262.7 150 91.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-68 262.3 150 93.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-68 261.9 150 91.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-68 261.9 150 91.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 5.0e-68 261.2 150 92.0
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-67 258.8 150 90.7
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-65 252.7 142 93.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-63 244.6 150 87.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.1e-62 243.4 146 88.4
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-62 242.3 150 86.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-61 240.0 150 86.0
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.3e-60 236.5 147 85.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.7e-60 236.1 150 83.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 9.5e-59 230.3 144 82.6
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-58 227.6 122 97.5
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-58 227.6 122 97.5
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-57 226.1 122 96.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-57 224.9 122 96.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 8.9e-57 223.8 141 78.7
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.2e-56 223.4 142 83.1
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.2e-56 223.4 148 77.0
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.5e-56 223.0 148 77.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.5e-56 223.0 140 81.4
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.5e-56 223.0 143 80.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-56 223.0 122 95.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-56 223.0 122 95.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.0e-56 222.6 140 82.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.0e-56 222.6 140 82.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-56 222.6 142 78.9
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 141 81.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 142 79.6
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 141 81.6
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 122 95.1
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.8e-56 221.1 141 78.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.8e-56 221.1 142 78.9
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.6e-56 220.7 142 78.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.3e-55 219.9 139 79.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.7e-55 219.5 146 77.4
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.2e-55 219.2 140 77.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.9e-55 218.8 146 78.8
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.9e-55 218.0 122 94.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 6.4e-55 217.6 140 79.3
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 8.4e-55 217.2 138 81.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 8.4e-55 217.2 139 79.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 8.4e-55 217.2 138 79.7
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 8.4e-55 217.2 138 79.7
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 8.4e-55 217.2 139 79.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 80.9
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.1e-54 216.9 140 79.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.4e-54 216.5 139 78.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.4e-54 215.7 138 82.6
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 3.2e-54 215.3 141 75.2
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 3.2e-54 215.3 141 75.2
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 4.1e-54 214.9 139 80.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.1e-54 214.9 145 75.2
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 5.4e-54 214.5 147 77.6
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 7.1e-54 214.2 140 77.1
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.1e-54 214.2 140 75.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 9.2e-54 213.8 139 80.6
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.2e-53 213.4 145 73.8
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.6e-53 213.0 140 77.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.1e-53 212.6 142 76.1
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.7e-53 212.2 141 76.6
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-53 212.2 121 90.9
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.7e-53 212.2 140 78.6
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.5e-53 211.8 140 77.9
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 4.6e-53 211.5 146 76.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.6e-53 211.5 140 77.9
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.0e-53 211.1 145 73.1
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 7.8e-53 210.7 140 75.7
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-52 210.3 141 75.9
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.0e-52 210.3 139 75.5
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.3e-52 209.1 172 68.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 76.4
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 75.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 77.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 75.0
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.0e-52 208.8 141 80.1
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.0e-52 208.8 147 74.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.0e-52 208.8 133 80.5
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.1e-52 208.0 147 73.5
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.6e-52 207.6 148 75.0
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.6e-52 207.6 142 75.4
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.6e-52 207.6 142 75.4
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 6.6e-52 207.6 142 75.4
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 6.6e-52 207.6 141 75.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 6.6e-52 207.6 140 76.4
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 6.6e-52 207.6 140 75.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 8.6e-52 207.2 146 74.7
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-51 206.1 141 73.8
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.9e-51 206.1 141 73.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.5e-51 205.7 138 76.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.5e-51 205.7 141 73.8
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.5e-51 205.7 141 73.8
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.5e-51 205.7 141 73.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.5e-51 205.7 136 77.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-51 205.3 141 73.0
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 4.3e-51 204.9 140 74.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 5.6e-51 204.5 140 73.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 7.3e-51 204.1 149 73.2
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-50 203.4 141 73.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.2e-50 203.4 141 73.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.6e-50 203.0 147 72.1
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-49 200.3 139 72.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.4e-49 199.9 148 73.0
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 6.9e-49 197.6 187 58.8
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.4e-48 195.3 151 67.5
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.3e-47 193.4 147 68.7
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.2e-47 192.6 190 56.3
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.9e-47 191.4 182 60.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 3.2e-46 188.7 209 53.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 9.3e-46 187.2 122 79.5
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.1e-45 186.0 121 78.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.1e-45 186.0 116 81.9
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 3.5e-45 185.3 116 80.2
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 4.6e-45 184.9 214 51.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 6.0e-45 184.5 126 73.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.0e-44 183.7 151 64.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.3e-44 183.3 123 78.9
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.7e-44 183.0 116 78.4
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.3e-44 182.6 115 80.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.0e-44 182.2 118 78.0
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 5.1e-44 181.4 117 79.5
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.8e-42 175.6 135 68.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.1e-41 173.7 138 68.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.1e-41 173.7 226 47.3
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.4e-41 173.3 141 61.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 6.9e-41 171.0 137 60.6
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 9.0e-41 170.6 142 60.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 9.0e-41 170.6 122 71.3
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.5e-40 168.3 136 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 7.6e-40 167.5 142 58.5
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.6e-40 167.5 116 72.4
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.6e-40 167.5 116 72.4
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 7.4e-35 151.0 157 56.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.0e-33 145.2 88 85.2
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 3.8e-31 138.7 78 96.2
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 3.8e-31 138.7 78 96.2
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 4.9e-31 138.3 87 81.6
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-30 136.7 78 94.9
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.9e-30 136.3 88 80.7
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.1e-28 128.3 96 75.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 2.5e-27 125.9 136 54.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-27 124.8 72 94.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 8.2e-26 120.9 200 40.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 6.9e-25 117.9 146 45.2
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 9.0e-25 117.5 82 65.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.3e-23 113.6 70 80.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 7.1e-22 107.8 137 40.1
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-20 103.6 73 65.8
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.9e-20 102.1 64 79.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-15 87.4 57 70.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.7e-15 86.7 63 65.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.8e-15 85.5 147 34.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.2e-14 82.4 64 60.9
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.2e-13 80.5 69 68.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.9e-13 77.8 69 66.7
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.4e-12 77.0 49 73.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 3.9e-12 75.5 54 72.2
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-12 74.3 53 73.6
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-12 74.3 53 73.6
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.5e-11 73.6 134 29.1
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 1.3e-10 70.5 197 35.0
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.0e-07 60.8 53 52.8
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.5e-06 56.2 52 57.7


User provided reference genes

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