Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 6.8e-23 109.8 54 100.0
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.5e-17 92.0 50 90.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.3e-17 90.9 50 88.0
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-16 89.0 50 88.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-16 89.0 50 88.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-16 89.0 50 88.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-16 89.0 50 88.0
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-16 89.0 50 88.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.6e-16 87.4 50 84.0
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.0e-15 85.9 50 84.0
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.0e-15 85.9 50 84.0
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.0e-15 85.9 50 84.0
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.4e-15 85.5 50 84.0
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.4e-15 85.5 50 84.0
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.8e-15 85.1 50 82.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.8e-15 85.1 50 84.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.3e-15 84.7 50 80.0
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.3e-15 84.7 50 80.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.3e-15 84.7 50 84.0
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 84.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 82.0
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 82.0
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 84.0
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 84.0
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 82.0
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.0e-15 84.3 50 84.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 4.0e-15 84.0 50 82.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.0e-15 84.0 50 82.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.0e-15 84.0 50 84.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 4.0e-15 84.0 50 84.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 5.2e-15 83.6 50 82.0
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 5.2e-15 83.6 50 82.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 5.2e-15 83.6 50 82.0
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 5.2e-15 83.6 50 82.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 6.8e-15 83.2 50 82.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 6.8e-15 83.2 50 82.0
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 6.8e-15 83.2 50 82.0
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 6.8e-15 83.2 50 84.0
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 8.9e-15 82.8 50 80.0
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 8.9e-15 82.8 50 82.0
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 8.9e-15 82.8 50 80.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 8.9e-15 82.8 50 80.0
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 8.9e-15 82.8 50 80.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 82.0
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 82.0
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 82.0
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.2e-14 82.4 50 80.0
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 82.0
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.5e-14 82.0 50 80.0
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.0e-14 81.6 50 80.0
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.0e-14 81.6 50 80.0
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.0e-14 81.6 50 82.0
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.0e-14 81.6 50 80.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.0e-14 81.6 50 80.0
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.6e-14 81.3 50 78.0
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.6e-14 81.3 50 80.0
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.6e-14 81.3 50 80.0
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.6e-14 81.3 50 78.0
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.6e-14 81.3 50 76.0
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.4e-14 80.9 50 80.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 3.4e-14 80.9 50 80.0
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 3.4e-14 80.9 48 83.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.4e-14 80.9 50 80.0
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 3.4e-14 80.9 50 80.0
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 3.4e-14 80.9 50 78.0
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 78.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 80.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 76.0
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 78.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 4.4e-14 80.5 50 78.0
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.7e-14 80.1 50 78.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 5.7e-14 80.1 50 78.0
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 7.5e-14 79.7 50 78.0
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.5e-14 79.7 50 78.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 7.5e-14 79.7 50 80.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 7.5e-14 79.7 50 76.0
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 9.8e-14 79.3 50 74.0
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 9.8e-14 79.3 50 76.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 80.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 80.0
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 78.0
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 76.0
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 76.0
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 76.0
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 76.0
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 76.0
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.3e-13 79.0 50 78.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.2e-13 78.2 48 79.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.8e-13 77.8 50 80.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 2.8e-13 77.8 50 76.0
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.8e-13 77.8 50 76.0
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.7e-13 77.4 49 75.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.7e-13 77.4 50 76.0
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.7e-13 77.4 50 76.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.9e-13 77.0 50 74.0
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 8.3e-13 76.3 50 76.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.1e-12 75.9 50 72.0
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.1e-12 75.9 50 72.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-12 75.5 50 76.0
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-12 75.5 50 74.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-12 75.5 50 74.0
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.4e-12 75.5 50 74.0
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.8e-12 75.1 50 76.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.8e-12 75.1 50 76.0
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.4e-12 74.7 47 78.7
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.4e-12 74.7 50 74.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.2e-12 74.3 50 70.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 9.2e-12 72.8 45 77.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.2e-11 72.4 50 68.0
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.0e-11 71.6 50 72.0
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.0e-11 71.6 49 67.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.5e-11 70.9 50 66.0
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.3e-10 68.9 49 67.3
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.5e-09 65.5 41 75.6
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.2e-08 62.4 47 63.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 6.1e-08 60.1 50 60.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.1e-08 60.1 50 54.0
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.3e-07 58.2 46 56.5
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 4.0e-07 57.4 47 57.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.0e-06 55.1 50 50.0
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.8e-06 53.5 33 78.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 9.8e-06 52.8 46 56.5


User provided reference genes

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