Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-223 778.1 381 100.0
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 8.5e-205 716.8 386 93.8
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.9e-197 691.8 385 89.9
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.3e-178 629.0 397 80.1
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.6e-177 625.5 402 79.9
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.4e-175 619.8 396 78.8
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.9e-164 582.8 401 76.1
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 4.9e-160 568.2 392 73.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.4e-159 565.8 395 74.4
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 9.2e-159 563.9 382 74.3
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.7e-158 562.4 391 73.7
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.7e-158 562.4 394 72.8
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.5e-156 556.6 404 72.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-155 553.1 401 71.8
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.1e-155 550.8 401 71.3
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.8e-154 549.7 402 70.9
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-154 549.7 327 82.0
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 2.4e-154 549.3 368 74.7
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 4.0e-154 548.5 357 76.8
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.0e-153 546.2 320 82.8
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.6e-153 545.8 403 70.7
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.6e-153 545.8 396 71.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.4e-153 545.4 401 71.3
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 7.6e-153 544.3 396 71.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.2e-152 542.7 407 71.0
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.8e-152 542.0 319 83.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 4.9e-152 541.6 400 70.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.4e-152 541.2 320 81.9
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.4e-152 540.8 379 75.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.4e-151 540.0 397 71.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.4e-151 540.0 322 81.1
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 3.2e-151 538.9 394 70.6
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.2e-151 538.9 330 80.3
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 4.2e-151 538.5 331 80.4
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 5.4e-151 538.1 402 68.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.1e-150 536.2 388 71.6
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.0e-149 533.9 395 69.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.7e-149 533.1 352 75.6
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.1e-149 531.6 383 70.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.3e-148 528.9 322 80.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.3e-148 527.7 405 66.2
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.6e-147 526.6 320 78.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 6.9e-146 521.2 352 73.6
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 9.0e-146 520.8 332 78.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 9.0e-146 520.8 340 77.1
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.5e-145 520.0 318 80.2
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.4e-145 518.8 313 79.9
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 9.9e-145 517.3 317 78.5
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.4e-143 513.5 295 82.7
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 4.2e-143 511.9 327 76.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.2e-142 510.4 383 69.5
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.6e-142 510.0 400 64.5
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.5e-142 508.8 319 78.4
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.6e-142 508.4 387 67.4
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.9e-141 505.4 390 68.2
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.5e-140 503.4 310 80.0
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.1e-139 499.6 335 73.1
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 4.8e-139 498.4 400 66.0
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 6.2e-139 498.0 404 65.3
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.4e-138 496.1 405 64.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.1e-138 495.7 404 65.3
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 3.1e-138 495.7 401 65.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 5.3e-138 495.0 399 65.4
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 5.3e-138 495.0 324 75.0
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.0e-138 494.2 326 73.9
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-137 493.0 402 65.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-137 492.7 321 75.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.6e-137 492.7 321 75.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-136 488.0 386 64.8
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 6.4e-136 488.0 386 64.8
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 6.4e-136 488.0 386 64.8
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.4e-135 486.9 385 64.7
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.5e-135 486.1 355 68.2
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 5.5e-135 485.0 303 76.6
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-134 483.4 407 63.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.7e-134 482.6 395 64.8
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 3.5e-134 482.3 337 72.1
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.3e-133 479.6 332 75.3
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.5e-132 476.9 422 61.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.3e-132 475.3 402 61.9
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.1e-131 473.0 370 67.3
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.0e-129 466.5 379 64.9
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.6e-129 466.1 401 61.6
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.3e-128 463.8 257 86.4
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.7e-128 463.4 326 69.3
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.5e-127 459.5 375 64.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.6e-126 455.3 370 63.5
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.3e-125 453.8 330 70.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.8e-125 453.4 377 62.6
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.9e-124 449.9 414 59.7
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 3.3e-124 449.1 330 63.9
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.2e-123 444.5 330 70.3
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.2e-123 444.5 330 70.3
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.2e-123 444.5 330 70.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.4e-122 443.7 296 70.9
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.2e-121 440.7 291 69.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.3e-120 437.2 389 60.7
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.5e-120 434.9 295 69.2
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.9e-119 433.3 295 70.8
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.0e-117 427.6 262 81.7
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.4e-117 427.2 385 58.7
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.8e-117 426.8 333 65.8
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.9e-117 425.6 397 60.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.7e-116 421.0 409 58.7
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 4.8e-115 418.7 245 81.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.4e-114 417.2 242 81.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.4e-114 417.2 292 69.5
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.3e-114 415.2 321 62.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-113 414.1 216 94.4
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.7e-113 411.4 321 62.3
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.0e-112 411.0 236 81.8
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-112 410.6 374 56.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.3e-112 410.6 398 58.3
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 9.4e-111 404.4 334 66.5
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 5.7e-108 395.2 353 60.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 7.4e-108 394.8 241 79.7
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.7e-108 394.4 374 55.1
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-106 390.6 214 88.8
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.5e-105 387.1 290 67.9
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 3.3e-100 369.4 283 60.8
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.3e-100 369.4 235 75.7
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.7e-99 367.1 405 50.9
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.8e-99 365.5 256 71.1
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.0e-96 355.5 382 49.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 7.2e-95 351.7 337 59.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 3.6e-94 349.4 220 77.7
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 1.8e-90 337.0 332 52.4
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.4e-90 336.7 225 80.4
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.1e-90 336.3 295 57.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.2e-87 326.2 209 78.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 7.2e-87 325.1 349 51.9
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.9e-81 305.4 203 71.9
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-80 303.1 173 85.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.6e-78 296.2 331 53.5
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-77 294.7 321 53.9
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 4.0e-77 292.7 160 84.4
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.4e-76 289.3 180 80.0
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.8e-74 283.9 264 58.7
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.6e-73 280.8 171 83.6
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.6e-72 275.4 158 79.1
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 7.3e-71 271.9 215 62.3
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 8.9e-69 265.0 174 75.9
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 3.7e-67 259.6 188 67.6
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 6.4e-67 258.8 174 69.5
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 8.3e-67 258.5 194 63.9
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.7e-65 253.4 239 54.8
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.6e-65 252.7 154 75.3
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.1e-63 248.1 283 45.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 7.5e-60 235.3 241 56.8
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.4e-58 230.3 148 73.0
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 7.8e-57 225.3 137 77.4
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.6e-56 222.2 274 44.2
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.3e-53 213.8 143 72.7
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 5.2e-53 212.6 155 67.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-52 211.5 137 81.8
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.9e-50 204.1 386 38.3
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 9.2e-50 201.8 274 43.8
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.6e-49 201.1 182 56.0
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 6.0e-49 199.1 205 56.6
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 5.1e-48 196.1 194 57.7
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 4.3e-47 193.0 174 55.2
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.8e-46 190.3 175 54.3
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 4.8e-38 162.9 119 65.5
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-34 151.4 115 66.1
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-29 134.8 81 75.3
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.5e-28 131.3 82 78.0
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-25 121.7 136 45.6
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.3e-24 117.5 70 80.0
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 5.6e-23 112.8 102 53.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 6.5e-19 99.4 149 42.3
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.2e-18 97.1 163 40.5
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-17 94.7 53 81.1
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-14 85.1 56 71.4
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.6e-14 84.7 77 59.7
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-13 80.9 55 67.3
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.1e-13 80.1 45 80.0
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.3e-13 79.7 65 53.8
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-12 78.6 148 39.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-12 78.2 44 88.6
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.8e-12 76.3 60 60.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-11 74.7 63 57.1
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-09 68.2 48 68.8
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.6e-09 68.2 252 27.8
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 4.6e-09 66.6 261 29.5
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 6.1e-09 66.2 252 28.2


User provided reference genes

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