Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 9.3e-110 400.2 201 100.0
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 5.1e-100 367.9 202 94.1
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 6.3e-98 360.9 205 92.2
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.4e-97 359.0 216 88.0
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 2.0e-75 286.2 216 72.7
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 1.1e-70 270.4 207 72.5
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.8e-68 263.1 207 70.5
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 2.2e-66 256.1 212 65.6
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 6.1e-61 238.0 211 63.0
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 8.3e-58 227.6 185 68.6
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 7.8e-56 221.1 207 61.8
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 3.8e-55 218.8 170 70.0
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 5.0e-55 218.4 194 62.9
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 8.6e-55 217.6 211 60.7
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 1.5e-54 216.9 216 57.4
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 1.9e-54 216.5 142 78.2
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.9e-54 216.5 216 57.9
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 3.3e-54 215.7 221 59.3
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 1.2e-53 213.8 213 57.7
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 1.2e-53 213.8 212 55.2
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 3.6e-53 212.2 209 55.0
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 1.0e-52 210.7 220 55.5
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 2.3e-52 209.5 207 57.5
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 3.1e-52 209.1 217 57.1
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 3.4e-51 205.7 183 61.2
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 5.8e-51 204.9 219 56.2
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 5.8e-51 204.9 212 56.6
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 9.8e-51 204.1 209 57.9
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 1.3e-50 203.8 158 69.0
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 1.7e-50 203.4 220 55.9
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 2.2e-50 203.0 187 61.0
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 4.9e-50 201.8 200 55.5
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 1.1e-49 200.7 212 55.2
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.9e-49 199.9 209 54.1
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.9e-49 199.9 180 61.7
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 3.2e-49 199.1 121 81.0
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 5.4e-49 198.4 197 58.4
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 9.2e-49 197.6 188 57.4
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.6e-48 196.8 204 54.9
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 2.0e-48 196.4 135 74.1
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 2.7e-48 196.1 206 57.8
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 7.8e-48 194.5 209 55.5
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 7.8e-48 194.5 175 61.7
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 7.8e-48 194.5 205 55.1
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.0e-47 194.1 121 82.6
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.3e-47 193.7 206 54.4
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.7e-47 193.4 206 53.9
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 1.7e-47 193.4 176 61.4
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.3e-47 193.0 152 66.4
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 2.3e-47 193.0 209 54.5
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 3.0e-47 192.6 161 64.6
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 3.0e-47 192.6 116 87.9
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 5.0e-47 191.8 205 55.6
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 8.6e-47 191.0 163 63.8
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 1.5e-46 190.3 119 81.5
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.9e-46 189.9 135 69.6
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 4.3e-46 188.7 135 71.9
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 9.5e-46 187.6 111 82.0
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 9.5e-46 187.6 183 58.5
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 1.2e-45 187.2 128 75.0
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 1.2e-45 187.2 151 66.9
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 2.1e-45 186.4 203 54.7
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 2.8e-45 186.0 143 67.1
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 3.6e-45 185.7 210 52.4
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 6.2e-45 184.9 208 52.9
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 6.2e-45 184.9 208 52.9
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 6.2e-45 184.9 151 62.3
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 8.0e-45 184.5 129 71.3
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.4e-44 183.7 186 54.8
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.4e-44 183.7 202 54.5
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 1.4e-44 183.7 160 64.4
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 1.8e-44 183.3 160 61.2
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 2.3e-44 183.0 183 56.3
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 4.4e-43 178.7 121 72.7
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 7.5e-43 177.9 107 84.1
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 9.8e-43 177.6 132 69.7
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 9.8e-43 177.6 105 81.9
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.3e-42 177.2 109 78.0
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 2.2e-42 176.4 132 69.7
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 4.9e-42 175.3 102 82.4
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.1e-41 174.1 103 81.6
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 1.4e-41 173.7 207 53.1
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 5.4e-41 171.8 141 62.4
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 5.4e-41 171.8 111 75.7
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 7.0e-41 171.4 100 84.0
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 7.0e-41 171.4 114 73.7
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.2e-40 170.6 103 80.6
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.6e-40 170.2 111 74.8
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 1.6e-40 170.2 114 73.7
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 1.6e-40 170.2 114 73.7
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 1.6e-40 170.2 114 73.7
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 1.6e-40 170.2 114 73.7
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 2.1e-40 169.9 117 72.6
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 2.7e-40 169.5 114 73.7
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 4.6e-40 168.7 126 65.9
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 6.0e-40 168.3 102 80.4
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 6.0e-40 168.3 126 65.9
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 3.9e-39 165.6 102 78.4
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.1e-38 164.1 103 78.6
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 3.6e-37 159.1 102 76.5
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 1.2e-35 154.1 101 75.2
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 1.5e-35 153.7 102 72.5
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 5.8e-35 151.8 103 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 4.9e-34 148.7 111 65.8
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.0e-31 141.0 103 64.1
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 3.3e-30 136.0 89 75.3
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 3.1e-28 129.4 105 60.0
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 1.5e-27 127.1 70 84.3
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 3.4e-27 125.9 78 79.5
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 3.5e-24 115.9 63 85.7
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 1.5e-19 100.5 161 37.3
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 3.8e-18 95.9 55 81.8
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 2.4e-17 93.2 77 58.4
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 1.2e-16 90.9 44 90.9
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.6e-16 90.5 62 72.6
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 3.8e-10 69.3 44 68.2
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 3.2e-09 66.2 45 64.4


User provided reference genes

Program Settings