Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446201 Rosa chinensis HOM05D007299 ORTHO05D009106 4.2e-143 511.5 292 100.0
FAN12G2175 Fragaria x ananassa HOM05D007299 ORTHO05D009106 4.5e-121 438.3 290 85.2
FvH4_4g36440 Fragaria vesca HOM05D007299 ORTHO05D009106 5.0e-120 434.9 290 84.1
FAN07G2538 Fragaria x ananassa HOM05D007299 ORTHO05D009106 8.5e-120 434.1 290 83.4
FAN17G2059 Fragaria x ananassa HOM05D007299 ORTHO05D009106 1.1e-119 433.7 290 84.5
FAN22G0217 Fragaria x ananassa HOM05D007299 ORTHO05D009106 4.6e-118 428.3 290 83.1
Prupe.1G343500 Prunus persica HOM05D007299 ORTHO05D009106 1.6e-102 376.7 305 78.7
MD13G1009200 Malus domestica HOM05D007299 ORTHO05D009106 1.7e-99 366.7 297 78.1
MD16G1007200 Malus domestica HOM05D007299 ORTHO05D009106 3.6e-94 349.0 294 75.5
CANSAT78G0052 Cannabis sativa HOM05D007299 ORTHO05D009106 2.1e-78 296.6 299 56.5
GSVIVG01010231001 Vitis vinifera HOM05D007299 ORTHO05D009106 5.4e-74 282.0 302 59.3
MELO3C004425.2 Cucumis melo HOM05D007299 ORTHO05D009106 1.5e-71 273.9 288 54.9
TPR.G24986 Trifolium pratense HOM05D007299 ORTHO05D009106 2.5e-71 273.1 281 59.1
Cfa015123 Carpinus fangiana HOM05D007299 ORTHO05D009106 5.6e-71 271.9 291 59.1
Lj3g0027807 Lotus japonicus HOM05D007299 ORTHO05D009106 7.3e-71 271.6 288 57.6
Glyma.12G025700 Glycine max HOM05D007299 ORTHO05D009106 2.1e-70 270.0 278 61.9
CiPaw.05G165900 Carya illinoinensis HOM05D007299 ORTHO05D009106 3.6e-70 269.2 294 54.4
Glyma.11G099800 Glycine max HOM05D007299 ORTHO05D009106 6.2e-70 268.5 278 63.3
Dinv13815 Davidia involucrata HOM05D007299 ORTHO05D009106 8.0e-70 268.1 290 55.5
Nn3g18668 Nelumbo nucifera HOM05D007299 ORTHO05D009106 1.0e-69 267.7 290 55.2
Cpa.g.sc2.109 Carica papaya HOM05D007299 ORTHO05D009106 1.8e-69 266.9 284 56.0
Sed0015300 Sechium edule HOM05D007299 ORTHO05D009106 1.8e-69 266.9 281 53.7
Ciclev10005530m.g Citrus clementina HOM05D007299 ORTHO05D009106 3.1e-69 266.2 300 60.0
Manes.10G068700 Manihot esculenta HOM05D007299 ORTHO05D009106 5.2e-69 265.4 289 54.3
Ca_19013_v3 Cicer arietinum L. HOM05D007299 ORTHO05D009106 1.5e-68 263.8 281 59.1
PGR044G1966 Punica granatum HOM05D007299 ORTHO05D009106 2.6e-68 263.1 317 50.2
TWI77G0874 Tripterygium wilfordii HOM05D007299 ORTHO05D009106 4.4e-68 262.3 297 56.2
TAR622G0038 Trochodendron aralioides HOM05D007299 ORTHO05D009106 4.4e-68 262.3 296 56.4
Phvul.011G028100 Phaseolus vulgaris HOM05D007299 ORTHO05D009106 1.3e-67 260.8 282 58.9
Eucgr.J01834 Eucalyptus grandis HOM05D007299 ORTHO05D009106 1.7e-67 260.4 292 53.1
VMungo1127G0955 Vigna mungo HOM05D007299 ORTHO05D009106 1.7e-67 260.4 287 58.5
arahy.Tifrunner.gnm1.ann1.IBNY1Y Arachis hypogaea HOM05D007299 ORTHO05D009106 4.9e-67 258.8 298 56.0
MBI03_g22264_MAGBIO Magnolia biondii HOM05D007299 ORTHO05D009106 4.9e-67 258.8 310 51.0
Psat7g177800 Pisum sativum HOM05D007299 ORTHO05D009106 1.9e-66 256.9 273 59.3
Actinidia13749 Actinidia chinensis HOM05D007299 ORTHO05D009106 7.0e-66 255.0 325 52.3
arahy.Tifrunner.gnm1.ann1.NVJW8G Arachis hypogaea HOM05D007299 ORTHO05D009106 1.2e-65 254.2 297 55.6
PSO384G1235 Papaver somniferum HOM05D007299 ORTHO05D009106 1.6e-65 253.8 298 50.7
Rhsim09G0078300 Rhododendron simsii HOM05D007299 ORTHO05D009106 2.0e-65 253.4 295 55.3
COL.COLO4_27652 Corchorus olitorius HOM05D002463 ORTHO05D002669 6.6e-64 248.4 296 50.7
vmacro10889 Vaccinium macrocarpon HOM05D007299 ORTHO05D009106 9.5e-63 244.6 313 52.4
Thecc.02G310600 Theobroma cacao HOM05D007299 ORTHO05D009106 2.8e-62 243.0 313 52.7
ECA246G3185 Erigeron canadensis HOM05D007299 ORTHO05D009106 6.2e-62 241.9 285 49.8
Duzib268G1125 Durio zibethinus HOM05D007299 ORTHO05D009106 1.1e-61 241.1 315 52.4
CsaV3_2G003690 Cucumis sativus L. HOM05D007299 ORTHO05D009106 3.1e-61 239.6 289 56.4
Lalb_Chr19g0139441 Lupinus albus HOM05D007299 ORTHO05D009106 4.0e-61 239.2 283 50.9
PSO339G0795 Papaver somniferum HOM05D007299 ORTHO05D009106 2.0e-60 236.9 296 51.0
Hund24259 Selenicereus undatus HOM05D007299 ORTHO05D009106 3.4e-60 236.1 303 45.9
Potri.010G097400 Populus trichocarpa HOM05D007299 ORTHO05D009106 4.4e-60 235.7 297 59.6
Atru.chr11.1092 Acer truncatum HOM05D007299 ORTHO05D009106 6.4e-59 231.9 227 56.4
Gohir.D02G135500 Gossypium hirsutum HOM05D007299 ORTHO05D009106 1.9e-58 230.3 310 48.1
Aqoxy3G04214 Aquilegia oxysepala HOM05D007299 ORTHO05D009106 3.2e-58 229.6 289 48.8
Nitab4.5_0000129g0380 Nicotiana tabacum HOM05D007299 ORTHO05D009106 3.2e-58 229.6 286 57.3
QL03p042773 Quercus lobata HOM05D007299 ORTHO05D009106 4.1e-58 229.2 188 64.4
Sp3g01850 Schrenkiella parvula HOM05D007299 ORTHO05D009106 9.2e-58 228.0 282 48.6
PGSC0003DMG400031371 Solanum tuberosum HOM05D007299 ORTHO05D009106 9.2e-58 228.0 288 51.4
Cc11_g02600 Coffea canephora HOM05D007299 ORTHO05D009106 1.2e-57 227.6 304 46.1
Aa31LG5G13290 Aethionema arabicum HOM05D007299 ORTHO05D009106 3.5e-57 226.1 292 48.3
Gorai.005G151500 Gossypium raimondii HOM05D007299 ORTHO05D009106 6.0e-57 225.3 310 48.1
Sabra10G0069800 Salix brachista HOM05D007299 ORTHO05D009106 1.7e-56 223.8 331 54.1
Lj3A853G78 Lonicera japonica HOM05D007299 ORTHO05D009106 2.3e-56 223.4 226 54.4
BraA06t23286Z Brassica rapa HOM05D007299 ORTHO05D009106 3.0e-56 223.0 285 48.4
THA.LOC104820913 Tarenaya hassleriana HOM05D007299 ORTHO05D009106 3.9e-56 222.6 253 53.0
Migut.L00603 Erythranthe guttata HOM05D007299 ORTHO05D009106 6.6e-56 221.9 286 47.9
A05p44300 Brassica napus HOM05D007299 ORTHO05D009106 8.6e-56 221.5 281 48.0
HPP92_025841 Vanilla planifolia HOM05D007299 ORTHO05D009106 8.6e-56 221.5 217 53.5
AL3G12230 Arabidopsis lyrata HOM05D007299 ORTHO05D009106 1.1e-55 221.1 283 48.1
DCAR_023506 Daucus carota HOM05D007299 ORTHO05D009106 1.1e-55 221.1 332 51.5
Thhalv10021242m.g Eutrema salsugineum HOM05D007299 ORTHO05D009106 5.6e-55 218.8 283 45.9
C09p75940 Brassica napus HOM05D007299 ORTHO05D009106 9.5e-55 218.0 279 48.0
BolC5t35063H Brassica oleracea HOM05D007299 ORTHO05D009106 9.5e-55 218.0 279 48.0
Lsat_1_v5_gn_3_34281 Lactuca sativa HOM05D007299 ORTHO05D009106 9.5e-55 218.0 294 45.9
Carub.0003s0192 Capsella rubella HOM05D007299 ORTHO05D009106 2.1e-54 216.9 285 47.0
AUR62015163 Chenopodium quinoa HOM05D007299 ORTHO05D009106 2.1e-54 216.9 309 43.0
Os02g0762200 Oryza sativa ssp. japonica HOM05D007299 ORTHO05D009106 2.8e-54 216.5 319 52.7
CARHR076830 Cardamine hirsuta HOM05D007299 ORTHO05D009106 3.6e-54 216.1 277 45.1
HanXRQChr08g0209311 Helianthus annuus HOM05D007299 ORTHO05D009106 3.6e-54 216.1 291 45.7
Solyc04g008600.4 Solanum lycopersicum HOM05D007299 ORTHO05D009106 6.2e-54 215.3 289 55.0
AT3G02820 Arabidopsis thaliana HOM05D007299 ORTHO05D009106 1.4e-53 214.2 278 47.1
CAN.G880.11 Capsicum annuum HOM05D007299 ORTHO05D009106 3.1e-53 213.0 283 51.6
Sc21g0004170 Simmondsia chinensis HOM05D007299 ORTHO05D009106 8.9e-53 211.5 287 45.6
Sopen04g003760 Solanum pennellii HOM05D007299 ORTHO05D009106 9.9e-52 208.0 290 55.2
ATR0618G188 Amborella trichopoda HOM05D007299 ORTHO05D009106 3.2e-50 203.0 225 51.1
MSTRG.422 Avicennia marina HOM05D007299 ORTHO05D009106 9.6e-47 191.4 167 57.5
EL10Ac9g22867 Beta vulgaris HOM05D007299 ORTHO05D009106 1.6e-46 190.7 282 45.4
SGA_v2.0_scaffold47G17515 Striga asiatica HOM05D007299 ORTHO05D009106 1.1e-45 188.0 287 42.5
Nitab4.5_0003882g0040 Nicotiana tabacum HOM05D007299 ORTHO05D009106 5.2e-45 185.7 285 51.9
Peaxi162Scf00329g00814 Petunia axillaris HOM05D007299 ORTHO05D009106 8.9e-45 184.9 282 47.5
SEGI_39636 Sequoiadendron giganteum HOM05D007299 ORTHO05D009106 1.2e-44 184.5 285 41.8
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.2e-44 184.5 296 40.9
Zm00001eb228900 Zea mays HOM05D007299 ORTHO05D009106 4.5e-36 156.0 154 51.3
Pp3c24_950 Physcomitrium patens HOM05D007299 ORTHO05D009106 1.3e-35 154.5 303 35.0
AagrBONN_evm.TU.Sc2ySwM_344.3308 Anthoceros agrestis HOM05D007299 ORTHO05D009106 1.1e-31 141.4 154 46.1
Mapoly0024s0064 Marchantia polymorpha HOM05D007299 ORTHO05D009106 4.8e-30 136.0 310 33.9
Gohir.A03G110900 Gossypium hirsutum HOM05D007299 ORTHO05D009106 3.8e-27 126.3 176 48.9
CDE04G3037 Ceratophyllum demersum HOM05D007299 ORTHO05D009106 1.1e-26 124.8 218 39.4
Ah.01g013250 Amaranthus hybridus HOM05D007299 ORTHO05D009106 4.6e-25 119.4 172 41.9
AUR62017615 Chenopodium quinoa HOM05D007299 ORTHO05D009106 1.0e-24 118.2 153 43.8
Glyma.14G178300 Glycine max HOM05D007299 ORTHO05D009106 5.6e-23 112.5 161 53.4
SMO339G0024 Selaginella moellendorffii HOM05D007299 ORTHO05D009106 7.4e-23 112.1 280 38.6
Oeu061722.1 Olea europaea HOM05D007299 ORTHO05D009106 1.8e-21 107.5 103 52.4
ClCG02G017080 Citrullus lanatus HOM05D007299 ORTHO05D009106 4.9e-19 99.4 143 49.0
MCO03G157 Micromonas commoda HOM05D007299 ORTHO05D009106 5.3e-13 79.3 173 35.3
QL03p042779 Quercus lobata HOM05D007299 ORTHO05D009106 6.7e-08 62.4 108 46.3


User provided reference genes

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