Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 2.2e-255 885.2 462 100.0
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.4e-208 728.4 471 83.7
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.0e-207 726.9 470 83.4
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.4e-206 723.0 470 83.4
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 7.5e-187 657.5 473 76.1
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 2.3e-172 609.4 470 71.3
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 4.0e-172 608.6 474 70.0
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 3.8e-167 592.0 467 71.7
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 7.3e-166 587.8 468 68.8
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 1.2e-165 587.0 467 72.2
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 2.6e-163 579.3 470 68.3
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 6.6e-159 564.7 468 67.5
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 1.4e-156 557.0 486 65.4
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 8.9e-156 554.3 467 68.3
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 1.2e-155 553.9 465 67.7
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 2.6e-155 552.7 467 66.0
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 9.8e-155 550.8 453 64.9
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 4.9e-154 548.5 463 64.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 1.4e-153 547.0 470 66.0
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 2.4e-153 546.2 468 67.1
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 9.2e-153 544.3 468 69.0
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.0e-151 540.8 352 81.2
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 6.6e-151 538.1 468 65.8
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.3e-150 535.8 423 70.2
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.6e-149 533.5 468 64.5
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 1.6e-149 533.5 468 64.7
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.5e-147 526.9 468 63.9
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.4e-147 525.8 403 71.2
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 3.4e-147 525.8 527 56.9
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.2e-146 523.1 467 64.7
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.2e-146 523.1 431 66.1
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 7.1e-145 518.1 471 65.4
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 2.7e-144 516.2 435 67.4
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 3.3e-142 509.2 475 61.7
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 5.6e-142 508.4 467 61.7
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.2e-141 507.3 471 60.5
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 2.1e-141 506.5 455 64.0
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 2.1e-141 506.5 472 63.1
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 8.9e-140 501.1 463 61.8
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 3.2e-137 492.7 467 61.2
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 7.1e-137 491.5 467 61.0
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 7.8e-136 488.0 468 61.3
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 2.3e-135 486.5 468 61.1
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.1e-134 484.2 468 60.9
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 3.3e-134 482.6 470 60.2
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.5e-131 473.8 492 56.1
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 3.4e-131 472.6 470 58.9
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 1.3e-130 470.7 467 59.3
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 2.2e-130 469.9 411 63.3
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 2.9e-130 469.5 466 56.9
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 4.9e-130 468.8 470 60.6
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 4.9e-130 468.8 469 60.3
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 6.4e-130 468.4 463 59.0
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 8.4e-130 468.0 473 60.9
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.4e-129 466.5 467 56.7
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 4.2e-129 465.7 469 57.6
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 9.3e-129 464.5 473 60.3
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 5.1e-127 458.8 468 58.8
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 1.3e-125 454.1 469 55.2
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.4e-124 450.7 481 58.0
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 4.0e-124 449.1 467 56.1
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 9.0e-124 448.0 470 59.1
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 9.0e-124 448.0 480 56.5
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 1.4e-121 440.7 473 57.3
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 5.4e-121 438.7 332 70.5
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 7.9e-120 434.9 468 58.1
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.8e-119 433.7 415 58.1
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 2.3e-119 433.3 404 60.9
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 3.0e-119 433.0 351 66.1
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 5.1e-119 432.2 470 57.4
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.5e-118 430.6 466 56.0
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.9e-118 430.3 336 68.2
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 7.4e-118 428.3 467 56.5
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 1.6e-117 427.2 348 65.5
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 2.1e-117 426.8 461 57.0
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 3.6e-117 426.0 466 56.0
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 4.8e-117 425.6 467 56.3
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 8.1e-117 424.9 468 57.1
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 9.0e-116 421.4 400 61.0
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.5e-115 419.1 449 54.6
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.3e-114 417.5 452 53.1
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 1.7e-114 417.2 471 56.7
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.2e-114 416.8 470 54.9
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 3.9e-111 406.0 460 52.6
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.3e-109 401.0 532 47.6
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.0e-108 396.0 426 54.0
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.0e-106 391.3 359 61.6
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 2.5e-105 386.7 258 74.4
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 6.0e-104 382.1 397 54.9
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 2.6e-99 366.7 389 54.2
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 1.5e-94 350.9 402 53.5
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 9.1e-92 341.7 446 49.6
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 6.9e-84 315.5 493 43.8
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 1.0e-82 311.6 442 49.1
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 1.3e-82 311.2 318 52.2
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 3.2e-81 306.6 284 60.9
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.6e-80 304.3 490 44.9
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 6.7e-79 298.9 491 44.2
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 7.7e-75 285.4 467 39.6
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.6e-70 270.4 178 74.7
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.7e-62 242.7 394 45.7
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 7.0e-52 209.1 230 56.1
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 9.2e-52 208.8 316 40.8
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.7e-50 204.5 406 36.2
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 8.9e-47 192.2 176 61.4
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.0e-35 154.5 180 48.9
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 2.4e-28 131.0 185 46.5
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 7.6e-22 109.4 220 38.2
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 6.9e-15 86.3 76 59.2
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.9e-10 70.5 72 65.3
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 5.6e-09 66.6 42 71.4
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.3e-08 65.5 86 44.2
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 2.0e-06 58.2 115 42.6


User provided reference genes

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