Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 1.5e-167 592.8 300 100.0
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.2e-149 531.2 300 91.3
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.4e-148 528.5 300 91.0
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.1e-143 513.5 300 89.3
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.6e-143 511.1 300 89.0
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 4.9e-131 471.5 301 83.1
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 9.0e-117 424.1 269 83.6
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 3.8e-115 418.7 303 74.3
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 6.7e-112 407.9 298 73.2
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.3e-110 401.4 299 71.6
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 8.2e-110 401.0 293 74.1
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 7.2e-106 387.9 276 74.6
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 1.2e-105 387.1 293 68.6
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 1.2e-105 387.1 300 69.3
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 2.7e-105 386.0 299 68.9
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 4.6e-105 385.2 276 72.8
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 4.6e-105 385.2 266 71.8
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 1.0e-104 384.0 249 77.1
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 1.0e-104 384.0 245 78.0
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.8e-104 383.3 298 70.1
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 3.0e-104 382.5 288 70.8
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 8.7e-104 380.9 295 68.1
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.7e-104 380.9 289 71.3
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 8.7e-104 380.9 253 75.1
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.1e-103 380.6 297 70.4
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 1.1e-103 380.6 243 78.2
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 1.5e-103 380.2 287 71.1
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 2.5e-103 379.4 243 77.8
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 7.4e-103 377.9 289 69.6
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 1.3e-102 377.1 294 70.4
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 1.3e-102 377.1 300 67.7
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.6e-102 376.7 297 69.4
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.6e-102 376.7 304 66.4
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.6e-102 376.7 269 72.5
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 2.2e-102 376.3 296 69.3
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 4.8e-102 375.2 274 71.5
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 8.2e-102 374.4 296 67.9
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 8.2e-102 374.4 291 66.7
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 1.4e-101 373.6 309 66.3
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 2.4e-101 372.9 291 67.7
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 2.4e-101 372.9 274 69.3
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 9.0e-101 370.9 304 65.1
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 9.0e-101 370.9 291 66.3
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 1.2e-100 370.5 295 67.8
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 1.2e-100 370.5 249 74.3
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.2e-100 370.5 253 74.3
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 1.5e-100 370.2 286 69.6
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.5e-100 370.2 291 66.3
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 2.0e-100 369.8 281 69.4
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 5.9e-100 368.2 273 71.4
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 7.7e-100 367.9 316 66.1
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 1.3e-99 367.1 260 73.5
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 2.9e-99 365.9 290 66.2
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 3.8e-99 365.5 268 69.8
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 8.5e-99 364.4 301 66.1
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.4e-98 363.6 274 70.4
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.6e-97 360.1 300 64.0
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 3.6e-97 359.0 237 77.6
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 3.6e-97 359.0 294 67.3
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.0e-96 357.5 296 65.5
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.4e-96 357.1 285 67.0
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 1.8e-96 356.7 271 70.5
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 1.8e-96 356.7 242 74.0
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 2.3e-96 356.3 280 66.4
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.1e-96 355.1 299 66.9
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 1.1e-95 354.0 247 74.1
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 2.5e-95 352.8 250 74.8
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 3.3e-95 352.4 291 65.6
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 3.3e-95 352.4 290 67.6
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 5.7e-95 351.7 309 61.5
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 9.7e-95 350.9 279 64.9
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 9.7e-95 350.9 279 64.9
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.7e-94 350.1 280 66.8
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 2.2e-94 349.7 301 63.8
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 2.8e-94 349.4 275 64.0
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 3.1e-93 345.9 312 61.5
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 2.0e-92 343.2 288 66.7
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 9.4e-90 334.3 251 70.9
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.6e-89 333.6 285 62.5
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 6.1e-89 331.6 257 68.9
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 3.9e-88 328.9 255 69.0
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 2.6e-87 326.2 258 66.3
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 3.3e-87 325.9 225 72.9
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 7.4e-87 324.7 255 67.8
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.4e-85 320.5 290 59.7
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 7.0e-85 318.2 292 62.7
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 9.1e-85 317.8 249 66.3
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 7.2e-82 308.1 244 68.0
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 3.6e-81 305.8 231 67.1
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 2.3e-80 303.1 250 67.2
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 6.7e-80 301.6 195 77.4
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 1.4e-77 293.9 210 70.5
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 5.3e-77 292.0 266 59.8
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.2e-76 290.8 233 67.0
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 1.6e-76 290.4 225 63.1
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 3.7e-70 269.2 186 72.6
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 3.6e-65 252.7 263 54.4
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 1.5e-63 247.3 232 55.2
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 9.5e-58 228.0 227 52.9
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 1.0e-56 224.6 252 44.8
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 5.2e-48 195.7 137 72.3
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 2.5e-42 176.8 248 46.0
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 4.7e-41 172.6 239 41.4
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 1.4e-40 171.0 232 39.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.3e-35 154.5 243 37.9
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 2.2e-30 137.1 89 71.9
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 9.6e-26 121.7 136 50.7
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 4.6e-20 102.8 84 58.3
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 9.6e-18 95.1 150 39.3
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 4.8e-17 92.8 99 55.6
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 3.4e-15 86.7 103 51.5
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 3.4e-15 86.7 54 79.6
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 1.1e-13 81.6 59 67.8
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 2.4e-08 63.9 74 50.0
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 2.4e-08 63.9 74 50.0
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 2.4e-08 63.9 53 49.1
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 6.9e-08 62.4 74 48.6


User provided reference genes

Program Settings