Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444771 Rosa chinensis HOM05D007314 ORTHO05D003768 5.1e-75 284.3 138 100.0
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 5.5e-45 184.5 158 62.0
RcHm_v2.0_Chr5g0064801 Rosa chinensis HOM05D007314 ORTHO05D003768 3.0e-43 178.7 158 60.1
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 6.8e-35 151.0 147 52.4
RcHm_v2.0_Chr3g0492801 Rosa chinensis HOM05D007314 ORTHO05D003768 1.8e-32 142.9 101 67.3
RcHm_v2.0_Chr5g0059371 Rosa chinensis HOM05D007314 ORTHO05D003768 2.5e-29 132.5 91 71.4
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-28 130.2 85 63.5
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.6e-28 129.8 85 62.4
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 2.8e-28 129.0 87 63.2
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.8e-28 129.0 87 59.8
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 6.1e-28 127.9 87 60.9
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.0e-27 127.1 87 62.1
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.4e-27 126.7 133 47.4
MELO3C035305.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.4e-27 126.7 135 46.7
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 8.9e-27 124.0 165 39.4
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.6e-26 122.5 85 62.4
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.7e-25 118.6 134 44.0
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.4e-24 115.9 165 37.0
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 3.2e-24 115.5 152 38.2
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.6e-23 113.2 85 55.3
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-22 109.4 71 63.4
CANSAT25G2929 Cannabis sativa HOM05D007314 ORTHO05D003768 1.5e-21 106.7 124 41.1
MELO3C035542.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.5e-21 106.7 120 45.0
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 1.5e-21 106.7 142 41.5
RcHm_v2.0_Chr7g0200591 Rosa chinensis HOM05D007314 ORTHO05D003768 1.2e-20 103.6 87 50.6
MELO3C030512.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.1e-20 102.8 161 36.0
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-19 99.8 155 37.4
FvH4_4g12371 Fragaria vesca HOM05D007314 ORTHO05D003768 1.8e-19 99.8 132 42.4
MELO3C030644.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.1e-19 99.0 145 38.6
FvH4_4g01311 Fragaria vesca HOM05D007314 ORTHO05D003768 4.0e-19 98.6 120 38.3
FvH4_6g21082 Fragaria vesca HOM05D007314 ORTHO05D003768 6.8e-19 97.8 62 67.7
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.9e-19 97.4 77 53.2
CsaV3_4G009050 Cucumis sativus L. HOM05D007314 ORTHO05D003768 8.9e-19 97.4 84 52.4
MELO3C032996.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.0e-18 96.3 76 55.3
CsaV3_7G021120 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.0e-18 96.3 65 61.5
RcHm_v2.0_Chr3g0455961 Rosa chinensis HOM05D007314 ORTHO05D003768 3.4e-18 95.5 46 100.0
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.4e-18 95.1 75 54.7
C09p36000 Brassica napus HOM05D007314 ORTHO05D003768 2.7e-15 85.9 80 47.5
MELO3C035437.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.0e-14 82.4 70 51.4
CANSAT25G1818 Cannabis sativa HOM05D007314 ORTHO05D003768 5.6e-13 78.2 77 46.8
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 2.8e-12 75.9 74 50.0
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.8e-12 75.9 133 35.3
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 3.6e-12 75.5 74 48.6
MELO3C034792.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.1e-12 74.3 57 57.9
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 1.1e-11 73.9 80 45.0
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.8e-11 73.2 121 36.4
MELO3C029734.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-11 72.8 57 59.6
RcHm_v2.0_Chr7g0177401 Rosa chinensis HOM05D007314 ORTHO05D003768 2.3e-11 72.8 53 60.4
MELO3C035072.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.1e-11 72.4 48 64.6
CSS0045721 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 4.0e-11 72.0 82 42.7
PSO675G1909 Papaver somniferum HOM05D008526 ORTHO05D010380 6.8e-11 71.2 80 40.0
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 8.9e-11 70.9 74 44.6
Aqoxy3G03529 Aquilegia oxysepala HOM05D007314 ORTHO05D003768 1.5e-10 70.1 91 37.4
Aqoxy5G02986 Aquilegia oxysepala HOM05D007314 ORTHO05D000285 2.6e-10 69.3 81 38.3
MELO3C028630.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.8e-10 67.4 57 52.6
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 1.3e-09 67.0 77 41.6
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.7e-09 66.6 67 49.3
BolC2t08290H Brassica oleracea HOM05D007314 ORTHO05D003768 2.2e-09 66.2 99 37.4
Aqoxy3G00744 Aquilegia oxysepala HOM05D053128 ORTHO05D003768 3.7e-09 65.5 66 47.0
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.7e-09 65.5 80 41.2
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 6.4e-09 64.7 73 42.5
MELO3C031375.2 Cucumis melo HOM05D008781 ORTHO05D003768 1.4e-08 63.5 75 42.7
FvH4_1g29373 Fragaria vesca HOM05D008321 ORTHO05D003768 2.4e-08 62.8 100 35.0
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 3.2e-08 62.4 83 34.9
CSS0009587 Camellia sinensis var. sinensis HOM05D009091 ORTHO05D003768 4.1e-08 62.0 62 46.8
CSS0011469 Camellia sinensis var. sinensis HOM05D009091 ORTHO05D003768 4.1e-08 62.0 62 46.8
MELO3C033635.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.4e-08 61.6 48 58.3
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 5.4e-08 61.6 78 38.5
PSO801G0005 Papaver somniferum HOM05D008526 ORTHO05D010380 5.4e-08 61.6 76 34.2
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 9.2e-08 60.8 82 34.1
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 1.2e-07 60.5 85 37.6
MELO3C032453.2 Cucumis melo HOM05D007314 ORTHO05D034924 1.6e-07 60.1 43 58.1
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 1.6e-07 60.1 78 37.2
MELO3C029566.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.1e-07 59.7 45 57.8
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.1e-07 59.7 78 39.7
FAN15G1405 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.1e-07 59.7 93 34.4
FvH4_2g07142 Fragaria vesca HOM05D008321 ORTHO05D003768 3.5e-07 58.9 76 36.8
FvH4_2g08144 Fragaria vesca HOM05D008321 ORTHO05D003768 3.5e-07 58.9 72 37.5
MELO3C000505.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.6e-07 58.5 49 46.9
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 4.6e-07 58.5 72 38.9
FAN21G1044 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.6e-07 58.5 73 38.4
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 7.8e-07 57.8 71 38.0
RcHm_v2.0_Chr1g0318841 Rosa chinensis HOM05D009091 ORTHO05D003768 7.8e-07 57.8 88 42.0
FvH4_6g17382 Fragaria vesca HOM05D008321 ORTHO05D003768 1.0e-06 57.4 77 35.1
RcHm_v2.0_Chr1g0313071 Rosa chinensis HOM05D009091 ORTHO05D003768 1.0e-06 57.4 88 42.0
FvH4_5g23172 Fragaria vesca HOM05D008321 ORTHO05D003768 1.3e-06 57.0 70 40.0
FAN11G0529 Fragaria x ananassa HOM05D054682 ORTHO05D034924 1.3e-06 57.0 35 68.6
MELO3C000282.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-06 56.2 35 62.9
BolC3t20566H Brassica oleracea HOM05D007314 ORTHO05D003768 3.9e-06 55.5 74 31.1
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 8.6e-06 54.3 79 38.0


User provided reference genes

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