Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.2e-139 501.1 601 100.0
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.8e-124 450.7 602 95.2
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.4e-121 440.3 602 91.9
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.2e-117 427.9 613 89.9
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 9.3e-113 411.8 604 85.6
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.1e-103 379.4 633 86.1
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 4.3e-94 349.7 607 86.2
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 6.9e-92 342.4 602 87.9
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 7.1e-89 332.4 614 86.0
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 5.1e-79 299.7 619 78.2
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 4.8e-77 293.1 615 80.2
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 5.5e-73 279.6 622 78.6
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.1e-70 271.9 621 78.7
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 2.6e-70 270.8 607 78.1
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 3.3e-70 270.4 618 77.8
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.4e-70 270.0 609 79.1
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.4e-70 270.0 609 79.1
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 2.4e-68 264.2 616 77.3
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.4e-68 264.2 569 81.5
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.5e-67 261.5 621 75.8
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 1.0e-66 258.8 602 75.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 8.5e-66 255.8 605 77.0
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 5.5e-65 253.1 606 75.2
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 5.5e-65 253.1 618 75.7
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 7.2e-65 252.7 603 76.8
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 7.2e-65 252.7 618 75.9
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 9.4e-65 252.3 608 79.1
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 9.4e-65 252.3 617 75.4
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.2e-64 251.9 608 79.8
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.6e-64 251.5 603 76.8
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 3.6e-64 250.4 614 74.9
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 6.1e-64 249.6 614 72.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 6.1e-64 249.6 612 75.7
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.0e-63 248.8 614 73.1
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.4e-63 248.4 609 76.4
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.8e-63 248.1 610 78.7
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 3.3e-62 243.8 606 79.2
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 7.4e-62 242.7 602 79.2
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 9.7e-62 242.3 605 79.7
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.3e-61 241.9 604 79.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 4.8e-61 240.0 231 61.5
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.3e-61 239.6 243 57.2
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 8.2e-61 239.2 229 60.7
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.8e-60 238.0 615 74.8
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 5.3e-60 236.5 557 81.0
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 9.1e-60 235.7 610 76.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.6e-59 234.2 556 80.4
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 3.5e-59 233.8 616 78.2
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 4.5e-59 233.4 239 56.9
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 5.9e-59 233.0 610 56.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.0e-58 232.3 606 78.4
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.0e-58 232.3 231 56.3
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.0e-58 232.3 610 74.4
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 3.8e-58 230.3 619 72.7
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 4.2e-57 226.9 603 78.8
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 7.2e-57 226.1 618 72.0
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.2e-56 225.3 603 78.6
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.2e-56 225.3 603 78.6
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.6e-56 224.9 605 78.0
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.7e-56 224.2 241 56.4
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 4.7e-56 223.4 535 81.5
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.4e-55 221.9 610 75.1
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 2.3e-55 221.1 182 65.4
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 3.0e-55 220.7 608 77.8
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 4.0e-55 220.3 603 77.9
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 4.0e-55 220.3 603 77.9
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 4.0e-55 220.3 647 60.7
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 6.7e-55 219.5 608 77.6
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 6.7e-55 219.5 231 55.8
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 4.4e-54 216.9 198 61.6
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.2e-53 214.5 603 76.6
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.2e-53 214.5 617 61.9
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 6.3e-53 213.0 236 53.8
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.8e-52 211.5 612 77.1
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.4e-52 211.1 601 77.7
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 3.1e-52 210.7 262 52.7
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.7e-51 207.6 180 64.4
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.7e-51 207.6 236 55.9
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.3e-50 205.3 559 77.3
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.7e-50 204.9 243 51.9
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.2e-50 204.5 572 75.2
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.1e-49 202.2 572 75.2
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 2.5e-49 201.1 216 56.5
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 3.2e-49 200.7 229 52.4
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 1.6e-48 198.4 612 63.6
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.6e-48 198.4 490 89.2
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 3.6e-48 197.2 172 59.9
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 1.4e-47 195.3 246 49.2
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 1.4e-47 195.3 191 56.5
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 2.3e-47 194.5 246 49.2
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 3.0e-47 194.1 665 69.2
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.5e-46 191.8 238 53.4
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 3.4e-46 190.7 216 54.2
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 9.8e-46 189.1 158 62.7
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 1.7e-45 188.3 219 54.8
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.2e-45 188.0 254 48.0
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.2e-43 182.2 608 70.6
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 5.9e-43 179.9 207 50.2
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.1e-41 175.6 471 87.9
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 4.2e-41 173.7 225 48.0
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 4.2e-41 173.7 213 49.8
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 8.0e-40 169.5 140 63.6
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 6.8e-39 166.4 123 63.4
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.0e-36 156.4 182 53.8
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.0e-36 156.4 182 53.8
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.5e-33 148.7 122 63.9
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 9.5e-33 146.0 548 70.8
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 4.7e-32 143.7 183 48.6
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 6.8e-31 139.8 202 43.6
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 9.8e-30 136.0 128 60.2
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.0e-26 125.9 589 68.9
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 8.0e-24 116.3 247 39.3
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 7.5e-22 109.8 91 85.7
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.6e-18 96.7 57 84.2
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.6e-17 93.6 173 40.5
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.8e-16 91.3 64 68.8
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.8e-15 86.7 156 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 1.9e-12 78.6 172 35.5
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.2e-11 75.9 84 73.8
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 7.8e-11 73.2 166 34.9
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.3e-10 71.6 81 76.5
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.3e-10 71.6 81 76.5
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.5e-09 68.2 62 51.6
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 8.1e-08 63.2 147 34.0
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 1.4e-07 62.4 40 85.0
RcHm_v2.0_Chr5g0079721 Rosa chinensis HOM05D046827 ORTHO05D007107 4.0e-07 60.8 40 82.5
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 1.5e-06 58.9 87 62.1


User provided reference genes

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