Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 2.1e-55 218.8 108 100.0
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.9e-39 163.7 107 80.4
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.5e-37 159.5 106 79.2
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-37 159.5 106 79.2
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 9.7e-37 156.8 107 76.6
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.2e-36 155.6 107 76.6
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.5e-26 122.9 104 66.3
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.6e-26 122.1 107 62.6
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 3.2e-16 88.6 114 51.8
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 7.2e-16 87.4 104 51.0
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 3.6e-15 85.1 97 49.5
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.6e-15 85.1 97 49.5
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.0e-14 83.6 92 53.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.8e-14 82.8 119 49.6
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.8e-14 82.8 87 52.9
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 3.0e-14 82.0 103 47.6
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.0e-14 82.0 108 46.3
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 6.7e-14 80.9 61 70.5
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 2.0e-13 79.3 96 50.0
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.6e-13 79.0 100 46.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.6e-13 79.0 52 71.2
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.3e-13 78.6 107 43.9
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 4.4e-13 78.2 97 47.4
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.4e-13 78.2 109 47.7
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.7e-12 76.3 106 43.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 2.2e-12 75.9 117 45.3
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.7e-12 75.1 113 46.0
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 3.7e-12 75.1 105 46.7
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 3.7e-12 75.1 105 45.7
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 4.8e-12 74.7 113 45.1
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 8.2e-12 73.9 113 45.1
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 8.2e-12 73.9 52 61.5
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.1e-11 73.6 95 45.3
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.4e-11 72.4 129 39.5
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.4e-11 72.4 56 55.4
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.4e-11 72.4 90 46.7
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 3.1e-11 72.0 58 56.9
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 4.1e-11 71.6 61 57.4
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 4.1e-11 71.6 61 57.4
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 4.1e-11 71.6 58 56.9
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 5.3e-11 71.2 91 47.3
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 5.3e-11 71.2 102 42.2
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 9.1e-11 70.5 66 56.1
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.2e-10 70.1 100 43.0
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.2e-10 70.1 93 44.1
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.2e-10 70.1 110 40.0
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.6e-10 69.7 96 44.8
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.0e-10 69.3 104 43.3
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.6e-10 68.9 90 41.1
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 7.7e-10 67.4 106 42.5
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.0e-09 67.0 102 41.2
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.3e-09 66.6 109 41.3
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.3e-09 66.6 57 56.1
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.3e-09 66.6 61 52.5
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 2.2e-09 65.9 98 41.8
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 2.2e-09 65.9 85 44.7
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.9e-09 65.5 103 42.7
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 6.5e-09 64.3 101 42.6
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 8.5e-09 63.9 105 37.1
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 1.5e-08 63.2 86 44.2
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.9e-08 62.8 55 52.7
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.2e-08 62.0 53 54.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 3.2e-08 62.0 47 55.3
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 3.2e-08 62.0 51 51.0
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.2e-07 60.1 47 53.2
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.6e-07 59.7 103 38.8
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.1e-07 59.3 47 57.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.1e-07 59.3 47 57.4
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.6e-07 58.5 47 51.1
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 4.7e-07 58.2 67 46.3
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 4.7e-07 58.2 50 54.0
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 8.0e-07 57.4 108 36.1
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 8.0e-07 57.4 50 50.0
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.0e-06 57.0 47 55.3
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 1.0e-06 57.0 49 55.1
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.0e-06 57.0 51 47.1
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.0e-06 57.0 93 41.9
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 1.4e-06 56.6 100 34.0
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.4e-06 56.6 65 46.2
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.4e-06 56.6 50 52.0
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.4e-06 56.6 47 55.3
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 1.4e-06 56.6 115 36.5
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.4e-06 56.6 82 39.0
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.8e-06 56.2 107 36.4
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.8e-06 56.2 50 46.0
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.3e-06 55.8 47 53.2
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.3e-06 55.8 47 53.2
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 3.0e-06 55.5 64 42.2
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 3.0e-06 55.5 47 55.3
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 4.0e-06 55.1 47 51.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 5.2e-06 54.7 46 54.3
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 5.2e-06 54.7 60 48.3
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 5.2e-06 54.7 50 52.0
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 5.2e-06 54.7 96 38.5
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 5.2e-06 54.7 83 41.0
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 5.2e-06 54.7 103 35.0
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 5.2e-06 54.7 47 51.1
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 5.2e-06 54.7 64 42.2
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 5.2e-06 54.7 104 35.6
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 6.7e-06 54.3 47 53.2
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 6.7e-06 54.3 82 35.4
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 8.8e-06 53.9 47 51.1
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.8e-06 53.9 102 32.4
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 8.8e-06 53.9 47 48.9


User provided reference genes

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