Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 7.8e-21 102.8 51 100.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-17 91.7 46 97.8
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 5.2e-17 90.1 44 100.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 5.2e-17 90.1 46 97.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-16 89.0 46 95.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-16 88.6 46 95.7
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.4e-16 87.4 46 93.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.0e-13 76.6 49 73.5
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 5.1e-12 73.6 49 71.4
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.9e-11 71.6 46 71.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.3e-11 70.9 44 68.2
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.6e-10 68.6 44 75.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.1e-10 68.2 46 69.6
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.1e-10 68.2 44 72.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.8e-10 67.8 52 61.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.6e-10 67.4 39 74.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 3.6e-10 67.4 39 74.4
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-10 67.4 45 77.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.6e-10 67.4 38 78.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.8e-10 67.0 44 75.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.2e-10 66.6 32 100.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.2e-10 66.6 32 100.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.2e-10 66.6 32 100.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.2e-10 66.6 48 64.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.2e-10 66.6 44 70.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.2e-10 66.6 47 68.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 8.1e-10 66.2 41 70.7
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.1e-10 66.2 43 65.1
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.1e-09 65.9 35 80.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.4e-09 65.5 40 70.0
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.8e-09 65.1 44 63.6
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.8e-09 65.1 42 69.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.8e-09 65.1 44 65.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.4e-09 64.7 46 71.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.4e-09 64.7 44 65.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 4.0e-09 63.9 47 66.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.0e-09 63.9 35 80.0
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.0e-09 63.9 38 73.7
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.0e-09 63.9 45 64.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.3e-09 63.5 46 63.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 6.9e-09 63.2 45 62.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 9.0e-09 62.8 46 63.0
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.2e-08 62.4 44 68.2
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.2e-08 62.4 44 70.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.2e-08 62.4 44 70.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.2e-08 62.4 44 70.5
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-08 62.4 35 77.1
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-08 62.4 35 77.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.2e-08 62.4 35 77.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.5e-08 62.0 35 77.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.6e-08 61.2 38 71.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.4e-08 60.8 46 58.7
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 4.4e-08 60.5 35 77.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.8e-08 60.1 42 69.0
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 5.8e-08 60.1 34 73.5
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 7.6e-08 59.7 46 60.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.6e-08 59.7 46 58.7
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 7.6e-08 59.7 41 65.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.7e-07 58.5 44 56.8
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.7e-07 58.5 35 68.6
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-07 58.2 41 58.5
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.2e-07 58.2 39 64.1
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 2.9e-07 57.8 38 63.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.9e-07 57.8 35 71.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.9e-07 57.8 35 74.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.8e-07 57.4 27 92.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.4e-07 56.6 47 57.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-06 55.8 41 56.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-06 55.8 41 56.1
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-06 55.8 39 59.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.1e-06 55.8 36 58.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.1e-06 55.8 33 69.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-06 55.5 34 73.5
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-06 55.5 35 54.3
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.4e-06 55.5 38 55.3
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.9e-06 55.1 37 64.9
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.9e-06 55.1 37 64.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.4e-06 54.7 38 55.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 9.3e-06 52.8 32 81.2


User provided reference genes

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