Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 2.6e-47 191.8 102 100.0
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.7e-41 171.8 105 90.5
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 1.0e-40 169.9 105 89.5
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.0e-40 169.9 105 88.6
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.0e-40 167.9 105 87.6
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 5.7e-39 164.1 106 88.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 9.4e-34 146.7 105 78.1
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 6.1e-33 144.1 105 76.2
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 4.0e-32 141.4 105 76.2
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 6.3e-30 134.0 89 86.5
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 4.5e-28 127.9 103 71.8
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 3.0e-24 115.2 103 66.0
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 4.0e-24 114.8 107 62.6
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 2.6e-23 112.1 104 63.5
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 7.5e-23 110.5 103 63.1
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 7.5e-23 110.5 103 62.1
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.7e-22 109.4 103 61.2
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.7e-22 109.4 108 63.9
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 2.2e-22 109.0 104 61.5
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 2.8e-22 108.6 104 63.5
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 6.3e-22 107.5 103 60.2
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.8e-21 105.9 109 58.7
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 9.2e-21 103.6 112 58.0
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 2.0e-20 102.4 106 56.6
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 2.7e-20 102.1 108 62.0
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 2.7e-20 102.1 99 61.6
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.7e-20 102.1 108 58.3
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 5.9e-20 100.9 103 61.2
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 7.8e-20 100.5 103 61.2
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.0e-19 100.1 99 57.6
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.3e-19 99.8 103 63.1
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.7e-19 99.4 103 57.3
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 2.3e-19 99.0 108 58.3
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 5.0e-19 97.8 106 55.7
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.9e-18 95.9 106 55.7
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.9e-18 95.9 103 55.3
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 2.5e-18 95.5 106 54.7
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 4.3e-18 94.7 106 53.8
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 5.6e-18 94.4 102 56.9
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.2e-17 93.2 106 53.8
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.6e-17 92.8 106 53.8
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.6e-17 92.8 106 56.6
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 3.6e-17 91.7 105 56.2
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 1.0e-16 90.1 107 56.1
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.4e-16 89.7 106 54.7
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.3e-16 89.0 114 54.4
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 5.2e-16 87.8 100 57.0
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 5.2e-16 87.8 107 53.3
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 6.8e-16 87.4 110 52.7
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 6.8e-16 87.4 98 58.2
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.2e-15 86.7 96 55.2
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.5e-15 86.3 113 52.2
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.0e-15 85.9 101 50.5
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.6e-15 85.5 102 51.0
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 4.4e-15 84.7 96 54.2
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 5.8e-15 84.3 110 50.9
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 7.5e-15 84.0 106 51.9
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 9.8e-15 83.6 111 53.2
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 1.3e-14 83.2 111 53.2
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 1.7e-14 82.8 100 56.0
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.9e-14 82.0 104 53.8
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 3.7e-14 81.6 106 49.1
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 3.7e-14 81.6 106 50.0
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 3.7e-14 81.6 106 49.1
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 1.1e-13 80.1 101 51.5
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.8e-13 79.3 105 52.4
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.1e-13 78.2 105 48.6
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 5.4e-13 77.8 111 50.5
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.6e-12 76.3 106 50.0
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.7e-12 75.5 105 51.4
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 7.8e-12 73.9 112 50.9
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 7.8e-12 73.9 101 50.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 7.8e-12 73.9 101 50.5
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 7.8e-12 73.9 104 51.9
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.0e-11 73.6 98 51.0
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.0e-11 73.6 110 46.4
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 1.3e-11 73.2 82 56.1
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.9e-11 71.6 103 45.6
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.9e-11 71.6 56 69.6
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 3.9e-11 71.6 110 48.2
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 6.6e-11 70.9 105 45.7
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 8.6e-11 70.5 107 49.5
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.9e-10 69.3 100 48.0
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 4.3e-10 68.2 103 50.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 4.3e-10 68.2 105 47.6
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 9.5e-10 67.0 47 74.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.2e-09 66.6 108 45.4
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 2.8e-09 65.5 105 48.6
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 3.6e-09 65.1 100 44.0
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 4.7e-09 64.7 103 47.6
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 8.0e-09 63.9 99 46.5
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 1.4e-08 63.2 98 51.0
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 2.3e-08 62.4 97 45.4
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.3e-08 62.4 99 49.5
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 8.9e-08 60.5 89 48.3
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 8.9e-08 60.5 102 44.1
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 1.2e-07 60.1 107 43.9
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.5e-07 59.7 98 42.9
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 2.6e-07 58.9 97 49.5
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.4e-07 58.2 103 40.8
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 4.4e-07 58.2 100 43.0
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 5.8e-07 57.8 45 66.7
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 5.8e-07 57.8 81 40.7
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 7.5e-07 57.4 99 46.5
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 9.8e-07 57.0 104 43.3
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 1.3e-06 56.6 66 51.5
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.9e-06 55.5 81 39.5
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.9e-06 55.5 98 38.8
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 2.9e-06 55.5 105 41.9
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 4.9e-06 54.7 69 43.5
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.4e-06 54.3 66 45.5
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 8.3e-06 53.9 64 43.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 8.3e-06 53.9 62 46.8


User provided reference genes

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