Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 2.7e-47 191.8 106 100.0
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.0e-43 177.9 106 95.3
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.6e-42 175.3 106 94.3
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-41 172.9 106 92.5
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.9e-41 171.0 106 91.5
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 6.6e-38 160.6 106 88.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.3e-33 146.4 106 80.2
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 8.3e-33 143.7 106 78.3
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.4e-32 142.9 106 78.3
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 9.2e-32 140.2 90 92.2
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 8.9e-27 123.6 104 72.1
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 6.4e-25 117.5 108 67.6
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 7.0e-24 114.0 106 65.1
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 1.6e-23 112.8 106 67.0
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 2.3e-22 109.0 107 64.5
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 3.0e-22 108.6 106 65.1
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 3.9e-22 108.2 107 63.6
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.1e-21 106.7 106 64.2
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 2.5e-21 105.5 106 63.2
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 2.5e-21 105.5 106 58.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 3.3e-21 105.1 107 66.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 4.3e-21 104.8 109 62.4
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 5.6e-21 104.4 108 63.9
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 9.5e-21 103.6 106 62.3
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 2.1e-20 102.4 114 61.4
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 2.8e-20 102.1 110 60.9
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 4.7e-20 101.3 100 64.0
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 4.7e-20 101.3 107 57.9
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.1e-19 100.1 109 59.6
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 5.2e-19 97.8 106 57.5
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 8.9e-19 97.1 102 59.8
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 1.2e-18 96.7 107 58.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.5e-18 96.3 106 57.5
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 2.0e-18 95.9 107 58.9
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 2.0e-18 95.9 107 59.8
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.6e-18 95.5 106 56.6
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 2.6e-18 95.5 106 57.5
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 3.4e-18 95.1 114 56.1
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 4.4e-18 94.7 106 56.6
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 5.8e-18 94.4 107 58.9
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 7.5e-18 94.0 106 55.7
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 6.4e-17 90.9 106 57.5
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.9e-16 89.4 106 53.8
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.9e-16 89.4 110 57.3
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.7e-15 85.5 108 55.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 6.0e-15 84.3 110 51.8
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 7.8e-15 84.0 103 50.5
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 7.8e-15 84.0 107 54.2
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 7.8e-15 84.0 110 54.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.3e-14 83.2 100 56.0
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.3e-14 83.2 103 53.4
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 1.3e-14 83.2 102 53.9
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.3e-14 82.4 106 53.8
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 3.9e-14 81.6 103 49.5
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 3.9e-14 81.6 100 56.0
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 5.1e-14 81.3 113 50.4
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 6.6e-14 80.9 106 52.8
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 8.6e-14 80.5 110 50.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.1e-13 80.1 112 54.5
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 3.3e-13 78.6 104 51.9
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 5.6e-13 77.8 105 49.5
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 5.6e-13 77.8 105 49.5
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 9.5e-13 77.0 105 51.4
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 1.2e-12 76.6 112 54.5
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 8.1e-12 73.9 105 48.6
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.1e-12 73.9 111 49.5
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 8.1e-12 73.9 114 47.4
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.1e-11 73.6 106 50.0
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.4e-11 73.2 107 51.4
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.3e-11 72.4 103 51.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.3e-11 72.4 103 51.5
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.3e-11 72.4 100 52.0
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.3e-11 72.4 110 50.9
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 8.9e-11 70.5 107 51.4
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 2.0e-10 69.3 110 50.9
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 2.0e-10 69.3 111 47.7
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 3.4e-10 68.6 101 48.5
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 9.9e-10 67.0 111 50.5
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 9.9e-10 67.0 111 46.8
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 9.9e-10 67.0 47 74.5
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.3e-09 66.6 48 75.0
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.7e-09 66.2 114 46.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.2e-09 65.9 100 43.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 6.4e-09 64.3 100 44.0
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.9e-08 62.8 109 44.0
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.9e-08 62.8 106 47.2
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 2.4e-08 62.4 103 51.5
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 4.1e-08 61.6 48 68.8
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 5.4e-08 61.2 87 50.6
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.2e-07 60.1 107 44.9
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 2.1e-07 59.3 112 43.8
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 2.1e-07 59.3 94 46.8
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 2.7e-07 58.9 101 47.5
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 6.0e-07 57.8 45 66.7
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 6.0e-07 57.8 112 44.6
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 6.0e-07 57.8 108 48.1
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.0e-06 57.0 107 44.9
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.3e-06 56.6 110 43.6
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 2.3e-06 55.8 104 45.2
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 3.0e-06 55.5 101 49.5
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 3.9e-06 55.1 101 48.5
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 3.9e-06 55.1 50 52.0


User provided reference genes

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