Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443591 Rosa chinensis HOM05D007477 ORTHO05D009428 1.1e-101 373.2 183 100.0
FvH4_4g34090 Fragaria vesca HOM05D007477 ORTHO05D009428 5.2e-83 311.2 184 84.2
FAN17G0828 Fragaria x ananassa HOM05D007477 ORTHO05D009428 5.2e-83 311.2 184 83.7
FAN07G0335 Fragaria x ananassa HOM05D007477 ORTHO05D009428 6.8e-83 310.8 184 83.2
FAN12G2365 Fragaria x ananassa HOM05D007477 ORTHO05D009428 2.6e-82 308.9 184 83.7
Prupe.1G330000 Prunus persica HOM05D007477 ORTHO05D009428 1.4e-75 286.6 189 77.8
GSVIVG01011707001 Vitis vinifera HOM05D007477 ORTHO05D009428 4.6e-63 245.0 187 67.9
Dinv28044 Davidia involucrata HOM05D007477 ORTHO05D009428 3.7e-57 225.3 189 60.3
QL03p033890 Quercus lobata HOM05D007477 ORTHO05D009428 3.7e-57 225.3 183 64.5
CiPaw.06G048300 Carya illinoinensis HOM05D007477 ORTHO05D009428 8.3e-57 224.2 192 60.4
Cfa014979 Carpinus fangiana HOM05D007477 ORTHO05D009428 1.2e-55 220.3 185 62.7
FAN22G0194 Fragaria x ananassa HOM05D007477 ORTHO05D009428 3.0e-54 215.7 184 64.7
Duzib251G0266 Durio zibethinus HOM05D007477 ORTHO05D009428 6.6e-54 214.5 192 58.9
Thecc.02G287400 Theobroma cacao HOM05D007477 ORTHO05D009428 3.3e-53 212.2 193 58.5
Cpa.g.sc1084.2 Carica papaya HOM05D007477 ORTHO05D009428 6.2e-52 208.0 190 60.0
PGR004G1414 Punica granatum HOM05D007477 ORTHO05D009428 1.8e-51 206.5 130 73.1
Eucgr.G02161 Eucalyptus grandis HOM05D007477 ORTHO05D009428 5.2e-51 204.9 182 61.5
Manes.15G131100 Manihot esculenta HOM05D007477 ORTHO05D009428 5.2e-51 204.9 189 55.6
ECA233G5235 Erigeron canadensis HOM05D007477 ORTHO05D009428 6.8e-51 204.5 189 58.7
Migut.L00398 Erythranthe guttata HOM05D007477 ORTHO05D009428 6.8e-51 204.5 185 57.8
BcaB05g24610 Brassica carinata HOM05D007477 ORTHO05D009428 1.2e-50 203.8 191 53.4
Sp5g25940 Schrenkiella parvula HOM05D007477 ORTHO05D009428 1.5e-50 203.4 192 53.6
CANSAT01G0728 Cannabis sativa HOM05D007477 ORTHO05D009428 2.6e-50 202.6 190 55.3
BraA02t06739Z Brassica rapa HOM05D007477 ORTHO05D009428 5.8e-50 201.4 191 52.9
Thhalv10019160m.g Eutrema salsugineum HOM05D007477 ORTHO05D009428 5.8e-50 201.4 130 68.5
BcaC08g46513 Brassica carinata HOM05D007477 ORTHO05D009428 7.6e-50 201.1 130 67.7
TWI74G0372 Tripterygium wilfordii HOM05D007477 ORTHO05D009428 9.9e-50 200.7 189 58.2
AL2G30200 Arabidopsis lyrata HOM05D007477 ORTHO05D009428 1.3e-49 200.3 179 56.4
BcaC03g15231 Brassica carinata HOM05D007477 ORTHO05D009428 1.7e-49 199.9 191 52.4
C02p28170 Brassica napus HOM05D007477 ORTHO05D009428 1.7e-49 199.9 191 52.4
BolC2t08861H Brassica oleracea HOM05D007477 ORTHO05D009428 1.7e-49 199.9 191 52.4
AUR62014194 Chenopodium quinoa HOM05D007477 ORTHO05D009428 2.9e-49 199.1 200 55.5
Gohir.D02G141700 Gossypium hirsutum HOM05D007477 ORTHO05D009428 4.9e-49 198.4 191 57.1
A02p16850 Brassica napus HOM05D007477 ORTHO05D009428 6.4e-49 198.0 191 52.4
BolC6t39542H Brassica oleracea HOM05D007477 ORTHO05D009428 6.4e-49 198.0 130 66.9
AT1G70760 Arabidopsis thaliana HOM05D007477 ORTHO05D009428 8.4e-49 197.6 179 55.9
MSTRG.7617 Avicennia marina HOM05D007477 ORTHO05D009428 8.4e-49 197.6 192 53.6
SalBow8G0293 Salvia bowleyana HOM05D007477 ORTHO05D009428 8.4e-49 197.6 173 60.7
Sed0009759 Sechium edule HOM05D007477 ORTHO05D009428 8.4e-49 197.6 191 55.0
BraA07t31278Z Brassica rapa HOM05D007477 ORTHO05D009428 2.4e-48 196.1 191 52.4
A07p37160 Brassica napus HOM05D007477 ORTHO05D009428 3.2e-48 195.7 191 52.4
C06p44830 Brassica napus HOM05D007477 ORTHO05D009428 3.2e-48 195.7 191 52.4
Gohir.A03G118700 Gossypium hirsutum HOM05D007477 ORTHO05D009428 3.2e-48 195.7 192 56.2
CARHR064020 Cardamine hirsuta HOM05D007477 ORTHO05D009428 7.1e-48 194.5 185 53.5
Lsat_1_v5_gn_8_44241 Lactuca sativa HOM05D007477 ORTHO05D009428 7.1e-48 194.5 196 54.1
THA.LOC104823000 Tarenaya hassleriana HOM05D007477 ORTHO05D009428 7.1e-48 194.5 178 55.1
Aa31LG4G10230 Aethionema arabicum HOM05D007477 ORTHO05D009428 9.2e-48 194.1 193 53.9
Lj3A866T67 Lonicera japonica HOM05D007477 ORTHO05D009428 1.2e-47 193.7 177 59.3
MELO3C005297.2 Cucumis melo HOM05D007477 ORTHO05D009428 1.6e-47 193.4 133 69.2
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.1e-47 193.0 188 55.9
Nn4g24250 Nelumbo nucifera HOM05D007477 ORTHO05D009428 4.6e-47 191.8 169 59.2
Ciclev10016822m.g Citrus clementina HOM05D007477 ORTHO05D009428 7.8e-47 191.0 194 56.2
Actinidia36649 Actinidia chinensis HOM05D007477 ORTHO05D009428 1.7e-46 189.9 182 57.1
Phvul.002G183200 Phaseolus vulgaris HOM05D007477 ORTHO05D009428 1.7e-46 189.9 186 52.7
HanXRQChr12g0363541 Helianthus annuus HOM05D007477 ORTHO05D009428 2.3e-46 189.5 208 52.4
Lalb_Chr07g0187731 Lupinus albus HOM05D007477 ORTHO05D009428 2.3e-46 189.5 197 51.3
Lj4g0016169 Lotus japonicus HOM05D007477 ORTHO05D009428 5.1e-46 188.3 196 52.0
Atru.chr11.654 Acer truncatum HOM05D007477 ORTHO05D009428 1.1e-45 187.2 190 53.7
Actinidia12373 Actinidia chinensis HOM05D007477 ORTHO05D009428 1.1e-45 187.2 172 57.6
unitig_26.g9564 Utricularia gibba HOM05D000544 ORTHO05D009428 1.1e-45 187.2 185 52.4
Carub.0002s1750 Capsella rubella HOM05D007477 ORTHO05D009428 2.5e-45 186.0 182 52.2
MD16G1022900 Malus domestica HOM05D007477 ORTHO05D009428 3.3e-45 185.7 139 71.2
DCAR_023590 Daucus carota HOM05D007477 ORTHO05D009428 4.3e-45 185.3 186 52.7
arahy.Tifrunner.gnm1.ann1.4G9RAC Arachis hypogaea HOM05D007477 ORTHO05D009428 1.6e-44 183.3 185 51.9
arahy.Tifrunner.gnm1.ann1.KUTA9A Arachis hypogaea HOM05D007477 ORTHO05D009428 2.8e-44 182.6 185 51.9
MBI12_g05373_MAGBIO Magnolia biondii HOM05D007477 ORTHO05D009428 2.8e-44 182.6 176 58.0
PSO478G2137 Papaver somniferum HOM05D007477 ORTHO05D009428 2.8e-44 182.6 171 55.0
Peaxi162Scf00376g00125 Petunia axillaris HOM05D007477 ORTHO05D009428 1.1e-43 180.6 192 53.6
Gorai.005G159500 Gossypium raimondii HOM05D007477 ORTHO05D009428 3.1e-43 179.1 181 55.8
VMungo0251G0485 Vigna mungo HOM05D007477 ORTHO05D009428 4.0e-43 178.7 194 48.5
Nitab4.5_0003022g0050 Nicotiana tabacum HOM05D007477 ORTHO05D009428 5.2e-43 178.3 188 55.3
Glyma.05G139800 Glycine max HOM05D007477 ORTHO05D009428 6.9e-43 177.9 192 49.5
Potri.010G110400 Populus trichocarpa HOM05D007477 ORTHO05D009428 6.9e-43 177.9 188 51.6
Cc11_g08270 Coffea canephora HOM05D007477 ORTHO05D009428 2.9e-41 172.6 174 52.9
Sopen05g023010 Solanum pennellii HOM05D007477 ORTHO05D002065 2.9e-41 172.6 185 52.4
Rhsim09G0093900 Rhododendron simsii HOM05D007477 ORTHO05D009428 1.1e-40 170.6 175 54.9
Solyc05g026550.3 Solanum lycopersicum HOM05D007477 ORTHO05D009428 1.1e-40 170.6 185 51.9
PGSC0003DMG400015900 Solanum tuberosum HOM05D007477 ORTHO05D009428 3.2e-40 169.1 185 51.9
CAN.G439.27 Capsicum annuum HOM05D007477 ORTHO05D009428 4.2e-40 168.7 187 52.4
Nitab4.5_0002473g0010 Nicotiana tabacum HOM05D007477 ORTHO05D009428 5.4e-40 168.3 188 53.7
Psat7g082600 Pisum sativum HOM05D007477 ORTHO05D009428 7.1e-40 167.9 203 49.3
Haze_10942 Corylus avellana HOM05D007477 ORTHO05D009428 1.6e-39 166.8 184 52.2
CDE05G1013 Ceratophyllum demersum HOM05D007477 ORTHO05D009428 1.3e-38 163.7 171 55.0
Ca_11592_v3 Cicer arietinum L. HOM05D007477 ORTHO05D009428 1.3e-38 163.7 199 47.7
Aqoxy3G00052 Aquilegia oxysepala HOM05D007477 ORTHO05D009428 1.7e-38 163.3 106 71.7
vmacro10662 Vaccinium macrocarpon HOM05D007477 ORTHO05D009428 7.3e-37 157.9 179 49.7
EL10Ac9g22714 Beta vulgaris HOM05D007477 ORTHO05D009428 4.8e-36 155.2 190 45.3
ClCG01G006330 Citrullus lanatus HOM05D007477 ORTHO05D009428 6.9e-35 151.4 198 46.0
Ah.01g007630 Amaranthus hybridus HOM05D007477 ORTHO05D009428 1.9e-32 143.3 124 58.9
ATR0564G098 Amborella trichopoda HOM05D007477 ORTHO05D009428 4.2e-32 142.1 116 56.0
Glyma.08G095100 Glycine max HOM05D007477 ORTHO05D009428 1.0e-30 137.5 191 41.9
MD13G1021900 Malus domestica HOM05D007477 ORTHO05D009428 1.8e-30 136.7 142 57.7
Zm00001eb312390 Zea mays HOM05D007477 ORTHO05D009428 7.4e-29 131.3 143 46.2
Zm00001eb099410 Zea mays HOM05D007477 ORTHO05D009428 3.1e-27 125.9 135 45.9
Os05g0348100 Oryza sativa ssp. japonica HOM05D007477 ORTHO05D009428 3.9e-22 109.0 70 65.7
AUR62039526 Chenopodium quinoa HOM05D007477 ORTHO05D009428 6.2e-20 101.7 114 44.7
SEGI_14142 Sequoiadendron giganteum HOM05D007477 ORTHO05D009428 5.8e-18 95.1 157 38.9
Mapoly0003s0200 Marchantia polymorpha HOM05D007477 ORTHO05D009428 9.3e-16 87.8 101 47.5
Pp3c24_18490 Physcomitrium patens HOM05D007477 ORTHO05D009428 9.3e-16 87.8 112 42.9
COL.COLO4_13101 Corchorus olitorius HOM05D007477 ORTHO05D009428 1.3e-12 77.4 114 43.0
Sabra10G0080700 Salix brachista HOM05D007477 ORTHO05D009428 1.6e-12 77.0 107 43.9
TAR622G1153 Trochodendron aralioides HOM05D007477 ORTHO05D009428 4.8e-12 75.5 54 64.8
AagrBONN_evm.TU.Sc2ySwM_344.2533 Anthoceros agrestis HOM05D007477 ORTHO05D009428 6.5e-09 65.1 85 42.4
SEGI_21620 Sequoiadendron giganteum HOM05D002696 ORTHO05D009428 6.1e-07 58.5 65 49.2


User provided reference genes

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