Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 3173.6 1603 100.0
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2996.8 1604 94.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2989.1 1614 93.4
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2985.7 1617 93.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2866.6 1605 89.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2855.5 1608 89.5
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2854.7 1606 89.4
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2685.2 1610 83.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2646.7 1618 82.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2644.0 1418 93.2
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2642.1 1613 82.8
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2636.7 1610 81.8
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2619.0 1613 81.4
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2613.6 1611 81.4
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2602.0 1606 80.9
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2594.7 1610 80.9
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2560.4 1613 79.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2559.6 1610 79.2
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2557.7 1612 79.5
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2554.6 1617 79.6
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2545.4 1613 79.6
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2520.0 1608 78.9
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2518.0 1615 78.5
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2516.9 1604 78.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2513.0 1612 77.9
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2507.2 1507 83.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2505.7 1639 77.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2504.6 1621 78.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2504.2 1582 79.8
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2491.1 1610 78.1
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2489.9 1616 77.6
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2480.3 1612 77.3
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2472.2 1625 77.4
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2469.5 1512 81.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2460.3 1612 77.6
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2457.6 1633 75.4
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2451.0 1639 76.3
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2441.8 1923 67.7
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2436.4 1604 75.6
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2413.6 1611 74.9
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2410.9 1614 76.1
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2407.9 1618 75.6
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2405.2 1614 75.7
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2401.3 1597 75.1
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2390.5 1610 74.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2382.8 1607 74.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2379.7 1604 74.3
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2379.4 1607 73.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2378.6 1597 75.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2378.6 1632 74.4
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2377.4 1663 72.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2375.5 1608 73.3
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1444 81.7
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2370.9 1624 74.4
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2370.5 1625 74.5
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2367.0 1655 73.8
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2364.3 1628 74.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1621 74.2
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1603 73.5
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2349.3 1603 74.7
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2343.9 1606 73.0
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2339.7 1612 74.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2339.7 1619 73.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2333.9 1587 73.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2327.0 1614 72.6
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1613 73.8
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2315.4 1615 73.0
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2302.7 1615 72.6
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2292.7 1594 72.9
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2286.9 1617 72.5
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2286.5 1516 76.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2278.8 1616 72.3
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2272.7 1614 72.1
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2271.1 1620 71.9
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2270.7 1620 72.0
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2266.9 1619 72.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2263.0 1619 71.8
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2234.5 1616 71.3
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2231.1 1617 71.2
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2228.8 1406 80.7
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2211.0 1955 60.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2194.9 1363 82.0
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2194.9 1550 71.9
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2184.1 1596 70.0
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2171.4 1598 69.3
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2107.4 1467 73.4
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2107.0 1609 67.1
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2083.5 1589 67.1
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2079.7 1619 67.4
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2077.4 1624 66.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 2024.6 1195 83.7
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1964.5 1599 63.5
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1924.4 1590 62.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1806.6 1575 62.3
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1724.1 1099 78.0
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1720.7 1217 72.1
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1671.8 1413 63.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1568.5 1372 61.6
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1546.2 974 78.3
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1510.7 966 77.4
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1457.2 1622 48.5
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1425.6 1204 60.5
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1404.8 1635 48.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1359.4 1589 46.4
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1249.6 1076 60.3
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1216.4 732 82.2
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1197.2 1611 46.4
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 6.8e-304 1048.1 644 80.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 7.6e-263 911.8 581 79.3
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.3e-259 901.0 632 72.0
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 6.2e-257 892.1 605 75.4
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 6.5e-246 855.5 534 80.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.7e-243 845.1 601 71.7
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.3e-242 842.8 588 73.1
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 9.4e-237 825.1 661 66.1
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.0e-216 755.7 498 75.3
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.2e-215 755.0 522 73.0
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 6.5e-206 722.6 639 60.1
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.7e-201 708.0 557 66.8
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 4.5e-199 699.9 509 71.5
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 2.8e-188 664.1 410 82.9
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 6.2e-188 662.9 513 66.9
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 4.6e-183 646.7 476 70.4
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.0e-170 604.7 553 60.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.8e-169 600.5 484 62.0
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-157 562.4 338 81.7
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.4e-155 555.4 360 80.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 3.0e-150 537.7 325 84.9
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.7e-133 480.3 292 82.5
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.9e-129 468.0 331 71.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.7e-124 451.1 398 60.3
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.4e-118 432.6 398 57.0
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.5e-117 429.1 318 68.6
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.5e-117 429.1 367 59.4
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.7e-114 416.8 316 69.0
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 5.0e-113 414.1 246 80.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-102 379.0 251 73.3
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 2.3e-78 298.9 212 73.1
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.4e-69 268.5 161 78.9
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 6.4e-68 264.2 161 76.4
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.9e-60 238.0 146 78.8
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.1e-59 236.9 141 80.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.2e-59 235.3 142 77.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.9e-52 212.2 210 55.2
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.2e-47 196.8 118 82.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.6e-47 196.4 129 76.0
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 6.2e-39 167.9 102 73.5
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 62.2
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 62.2
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 62.2
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 62.2
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 62.2
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 143 61.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.3e-38 164.9 142 60.6
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 6.9e-38 164.5 143 61.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-37 163.7 143 61.5
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 5.8e-37 161.4 93 77.4
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.4e-35 156.8 100 72.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 2.3e-33 149.4 100 63.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-30 140.6 130 58.5
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-30 139.8 130 58.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.2e-28 132.9 84 73.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.0e-25 122.5 93 65.6
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 5.1e-25 121.7 93 64.5
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 3.3e-24 119.0 91 59.3
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.8e-23 115.9 108 62.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.7e-18 99.4 74 62.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.9e-16 93.2 51 78.4
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 7.4e-16 91.3 55 78.2
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.2e-15 89.7 81 60.5
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-12 79.0 56 66.1
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.1e-11 77.4 50 72.0
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.5e-11 76.3 54 64.8
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.2e-10 73.9 172 39.0
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.8e-09 67.8 54 61.1
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.7e-07 63.5 56 66.1
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 2.4e-06 59.7 70 48.6
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 5.3e-06 58.5 38 60.5


User provided reference genes

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