Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0443221 Rosa chinensis HOM05D000118 ORTHO05D000098 1.1e-26 122.5 60 100.0
RcHm_v2.0_Chr1g0327761 Rosa chinensis HOM05D000118 ORTHO05D000098 1.1e-16 89.4 56 75.0
RcHm_v2.0_Chr4g0443251 Rosa chinensis HOM05D000118 ORTHO05D000098 1.2e-15 85.9 56 75.0
RcHm_v2.0_Chr4g0443261 Rosa chinensis HOM05D000118 ORTHO05D000098 2.6e-15 84.7 56 73.2
FvH4_4g33740 Fragaria vesca HOM05D000118 ORTHO05D000098 4.4e-15 84.0 56 75.0
FAN07G0100 Fragaria x ananassa HOM05D000118 ORTHO05D000098 4.4e-15 84.0 56 75.0
FAN17G1377 Fragaria x ananassa HOM05D000118 ORTHO05D000098 4.4e-15 84.0 56 75.0
FAN22G2064 Fragaria x ananassa HOM05D000118 ORTHO05D000098 4.4e-15 84.0 56 75.0
FAN12G2382 Fragaria x ananassa HOM05D000118 ORTHO05D000098 9.8e-15 82.8 56 73.2
Medtr1g032250 Medicago truncatula HOM05D000118 ORTHO05D000098 1.4e-13 79.0 56 71.4
TPR.G36936 Trifolium pratense HOM05D000118 ORTHO05D000098 4.1e-13 77.4 58 63.8
TAR629G0104 Trochodendron aralioides HOM05D000190 ORTHO05D000113 5.4e-13 77.0 54 66.7
Ca_12554_v3 Cicer arietinum L. HOM05D000118 ORTHO05D000098 7.1e-13 76.6 56 67.9
Ca_12565_v3 Cicer arietinum L. HOM05D000118 ORTHO05D000098 7.1e-13 76.6 56 67.9
Medtr1g032220 Medicago truncatula HOM05D000118 ORTHO05D000098 9.2e-13 76.3 56 67.9
Dinv01289 Davidia involucrata HOM05D000118 ORTHO05D000098 1.2e-12 75.9 57 63.2
TPR.G36953 Trifolium pratense HOM05D000118 ORTHO05D000098 1.6e-12 75.5 56 67.9
QL03p035503 Quercus lobata HOM05D000118 ORTHO05D000098 2.7e-12 74.7 56 64.3
Lj2g0012763 Lotus japonicus HOM05D000118 ORTHO05D000098 4.6e-12 73.9 56 66.1
Nitab4.5_0001916g0020 Nicotiana tabacum HOM05D000118 ORTHO05D000098 6.0e-12 73.6 56 64.3
Nitab4.5_0002414g0050 Nicotiana tabacum HOM05D000118 ORTHO05D000098 6.0e-12 73.6 56 64.3
Medtr1g032140 Medicago truncatula HOM05D000118 ORTHO05D000098 1.0e-11 72.8 41 82.9
Duzib251G0495 Durio zibethinus HOM05D000118 ORTHO05D000098 1.3e-11 72.4 56 62.5
Prupe.1G332200 Prunus persica HOM05D000118 ORTHO05D000098 1.3e-11 72.4 56 64.3
Rhsim07G0075100 Rhododendron simsii HOM05D000118 ORTHO05D000098 1.3e-11 72.4 41 78.0
Rhsim09G0090500 Rhododendron simsii HOM05D000118 ORTHO05D000098 1.3e-11 72.4 41 78.0
CSS0006299 Camellia sinensis var. sinensis HOM05D000118 ORTHO05D000098 1.7e-11 72.0 54 63.0
Lalb_Chr17g0338521 Lupinus albus HOM05D000118 ORTHO05D000098 1.7e-11 72.0 56 66.1
EL10Ac1g00912 Beta vulgaris HOM05D000118 ORTHO05D000098 2.3e-11 71.6 56 60.7
CAN.G829.1 Capsicum annuum HOM05D000118 ORTHO05D000098 2.3e-11 71.6 56 58.9
Lsat_1_v5_gn_4_12661 Lactuca sativa HOM05D000118 ORTHO05D000098 2.3e-11 71.6 56 60.7
PGSC0003DMG400029517 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.0e-11 71.2 56 62.5
vmacro22452 Vaccinium macrocarpon HOM05D000118 ORTHO05D000098 3.0e-11 71.2 41 78.0
Duzib248G0465 Durio zibethinus HOM05D000118 ORTHO05D000098 3.9e-11 70.9 56 62.5
Gohir.A03G114600 Gossypium hirsutum HOM05D000118 ORTHO05D000098 3.9e-11 70.9 45 71.1
Gohir.D02G141000 Gossypium hirsutum HOM05D000118 ORTHO05D000098 3.9e-11 70.9 45 71.1
Gorai.005G155500 Gossypium raimondii HOM05D000118 ORTHO05D000098 3.9e-11 70.9 45 71.1
Lalb_Chr10g0095801 Lupinus albus HOM05D000118 ORTHO05D000098 3.9e-11 70.9 41 80.5
PGR102G0792 Punica granatum HOM05D000118 ORTHO05D000098 5.1e-11 70.5 41 78.0
Cpa.g.sc2.209 Carica papaya HOM05D000118 ORTHO05D000098 6.6e-11 70.1 56 62.5
Cfa015008 Carpinus fangiana HOM05D000118 ORTHO05D000098 6.6e-11 70.1 56 58.9
COL.COLO4_16577 Corchorus olitorius HOM05D000118 ORTHO05D000098 6.6e-11 70.1 44 65.9
Haze_10896 Corylus avellana HOM05D000118 ORTHO05D000098 6.6e-11 70.1 56 60.7
Ah.05g175640 Amaranthus hybridus HOM05D000118 ORTHO05D000098 8.6e-11 69.7 54 57.4
Solyc04g007980.3 Solanum lycopersicum HOM05D000118 ORTHO05D000098 8.6e-11 69.7 56 60.7
Sopen04g003120 Solanum pennellii HOM05D000118 ORTHO05D000098 8.6e-11 69.7 56 60.7
CiPaw.06G051100 Carya illinoinensis HOM05D000118 ORTHO05D000098 1.1e-10 69.3 56 62.5
Peaxi162Scf00337g00926 Petunia axillaris HOM05D000118 ORTHO05D000098 1.1e-10 69.3 56 60.7
Psat6g045480 Pisum sativum HOM05D000118 ORTHO05D000098 1.1e-10 69.3 56 64.3
Potri.010G107500 Populus trichocarpa HOM05D000118 ORTHO05D000098 1.1e-10 69.3 58 56.9
Thecc.02G291500 Theobroma cacao HOM05D000118 ORTHO05D000098 1.1e-10 69.3 50 60.0
Medtr1g032240 Medicago truncatula HOM05D000118 ORTHO05D000098 1.5e-10 68.9 40 82.5
QL03p035357 Quercus lobata HOM05D000118 ORTHO05D000098 1.5e-10 68.9 41 73.2
QL03p035365 Quercus lobata HOM05D000118 ORTHO05D000098 1.5e-10 68.9 41 73.2
AUR62042754 Chenopodium quinoa HOM05D000118 ORTHO05D000098 1.9e-10 68.6 56 53.6
TWI74G0154 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 1.9e-10 68.6 42 66.7
TWI74G1008 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 1.9e-10 68.6 42 66.7
EL10Ac1g00913 Beta vulgaris HOM05D000118 ORTHO05D000098 2.5e-10 68.2 56 55.4
Nn3g18345 Nelumbo nucifera HOM05D000118 ORTHO05D000098 2.5e-10 68.2 56 55.4
TAR629G2152 Trochodendron aralioides HOM05D000118 ORTHO05D000098 2.5e-10 68.2 54 59.3
MD16G1020100 Malus domestica HOM05D000118 ORTHO05D000098 3.3e-10 67.8 54 61.1
Hund27337 Selenicereus undatus HOM05D000118 ORTHO05D000098 3.3e-10 67.8 56 53.6
TWI53G1828 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 3.3e-10 67.8 42 69.0
Atru.chr11.956 Acer truncatum HOM05D000118 ORTHO05D000098 4.3e-10 67.4 42 64.3
Atru.chr11.965 Acer truncatum HOM05D000118 ORTHO05D000098 4.3e-10 67.4 42 64.3
arahy.Tifrunner.gnm1.ann1.DHGV6W Arachis hypogaea HOM05D000118 ORTHO05D000098 4.3e-10 67.4 56 60.7
AUR62004266 Chenopodium quinoa HOM05D000118 ORTHO05D000098 4.3e-10 67.4 45 62.2
QL03p035417 Quercus lobata HOM05D000118 ORTHO05D000098 4.3e-10 67.4 56 58.9
Actinidia36632 Actinidia chinensis HOM05D000118 ORTHO05D000098 5.6e-10 67.0 41 70.7
Psat6g045440 Pisum sativum HOM05D000118 ORTHO05D000098 5.6e-10 67.0 56 60.7
arahy.Tifrunner.gnm1.ann1.LDRQ8E Arachis hypogaea HOM05D000118 ORTHO05D000098 7.3e-10 66.6 56 60.7
Glyma.07G168500 Glycine max HOM05D000118 ORTHO05D000098 9.5e-10 66.2 56 64.3
CiPaw.05G189800 Carya illinoinensis HOM05D000118 ORTHO05D000098 1.2e-09 65.9 56 55.4
HanXRQChr17g0566651 Helianthus annuus HOM05D000118 ORTHO05D000098 1.2e-09 65.9 42 71.4
Nn8g40490 Nelumbo nucifera HOM05D000118 ORTHO05D000098 1.2e-09 65.9 56 57.1
Aqoxy4G00300 Aquilegia oxysepala HOM05D000118 ORTHO05D000098 1.6e-09 65.5 56 50.0
Eucgr.B02667 Eucalyptus grandis HOM05D000118 ORTHO05D000098 2.8e-09 64.7 50 60.0
Glyma.02G084400 Glycine max HOM05D000118 ORTHO05D000098 2.8e-09 64.7 56 60.7
Manes.15G133500 Manihot esculenta HOM05D000118 ORTHO05D000098 2.8e-09 64.7 42 64.3
QL03p035460 Quercus lobata HOM05D000118 ORTHO05D000098 2.8e-09 64.7 56 57.1
HanXRQChr17g0566641 Helianthus annuus HOM05D000118 ORTHO05D000098 3.6e-09 64.3 42 69.0
PSO478G5288 Papaver somniferum HOM05D000118 ORTHO05D000098 4.7e-09 63.9 56 51.8
Phvul.003G020100 Phaseolus vulgaris HOM05D000118 ORTHO05D000098 4.7e-09 63.9 56 60.7
Phvul.003G020200 Phaseolus vulgaris HOM05D000118 ORTHO05D000098 4.7e-09 63.9 56 60.7
VMungo1215G3351 Vigna mungo HOM05D000118 ORTHO05D000098 4.7e-09 63.9 56 60.7
Ciclev10015577m.g Citrus clementina HOM05D000118 ORTHO05D000098 6.2e-09 63.5 42 66.7
Duzib251G0607 Durio zibethinus HOM05D000118 ORTHO05D000098 6.2e-09 63.5 45 62.2
MD16G1020000 Malus domestica HOM05D000118 ORTHO05D000098 6.2e-09 63.5 56 57.1
Sabra10G0078700 Salix brachista HOM05D000118 ORTHO05D000098 8.1e-09 63.2 56 53.6
TWI74G0079 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 8.1e-09 63.2 54 50.0
Oeu062643.1 Olea europaea HOM05D000118 ORTHO05D000098 1.1e-08 62.8 45 62.2
Phvul.003G020300 Phaseolus vulgaris HOM05D000118 ORTHO05D000098 1.1e-08 62.8 41 75.6
Sc07g0007370 Simmondsia chinensis HOM05D000118 ORTHO05D000098 1.1e-08 62.8 56 51.8
Haze_10893 Corylus avellana HOM05D000118 ORTHO05D000098 1.4e-08 62.4 47 53.2
DCAR_026797 Daucus carota HOM05D000118 ORTHO05D000098 1.4e-08 62.4 45 60.0
PSO478G1023 Papaver somniferum HOM05D000118 ORTHO05D000098 1.4e-08 62.4 56 44.6
GSVIVG01011670001 Vitis vinifera HOM05D000118 ORTHO05D000098 1.4e-08 62.4 56 51.8
Ah.05g175630 Amaranthus hybridus HOM05D000118 ORTHO05D000098 1.8e-08 62.0 41 63.4
CANSAT01G2353 Cannabis sativa HOM05D000118 ORTHO05D000098 1.8e-08 62.0 41 70.7
Hund27338 Selenicereus undatus HOM05D000118 ORTHO05D000098 1.8e-08 62.0 41 65.9
TWI74G1518 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 2.3e-08 61.6 42 59.5
Manes.17G083300 Manihot esculenta HOM05D000118 ORTHO05D000098 3.1e-08 61.2 56 53.6
TWI74G0195 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 3.1e-08 61.2 55 47.3
TWI74G1673 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 4.0e-08 60.8 42 59.5
Ah.05g175600 Amaranthus hybridus HOM05D000118 ORTHO05D000098 5.2e-08 60.5 56 53.6
AUR62004263 Chenopodium quinoa HOM05D000118 ORTHO05D000098 5.2e-08 60.5 54 53.7
DCAR_027621 Daucus carota HOM05D000118 ORTHO05D000098 5.2e-08 60.5 45 55.6
Atru.chr11.895 Acer truncatum HOM05D000118 ORTHO05D000098 6.8e-08 60.1 41 61.0
EL10Ac1g00916 Beta vulgaris HOM05D000118 ORTHO05D000098 6.8e-08 60.1 54 51.9
ECA234G4194 Erigeron canadensis HOM05D000118 ORTHO05D000098 6.8e-08 60.1 50 56.0
MD16G1019700 Malus domestica HOM05D000118 ORTHO05D000098 6.8e-08 60.1 41 63.4
Phvul.003G020000 Phaseolus vulgaris HOM05D000118 ORTHO05D000098 6.8e-08 60.1 41 70.7
Atru.chr11.964 Acer truncatum HOM05D000118 ORTHO05D000098 8.9e-08 59.7 45 57.8
EL10Ac1g00914 Beta vulgaris HOM05D000118 ORTHO05D000098 8.9e-08 59.7 45 53.3
Atru.chr11.893 Acer truncatum HOM05D000118 ORTHO05D000098 1.2e-07 59.3 41 61.0
HanXRQChr17g0566631 Helianthus annuus HOM05D000118 ORTHO05D000098 1.2e-07 59.3 42 64.3
TWI74G1335 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 1.2e-07 59.3 42 52.4
Ah.02g114400 Amaranthus hybridus HOM05D000118 ORTHO05D000098 2.0e-07 58.5 56 51.8
ECA234G0579 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-07 58.5 42 61.9
Lj6A739T50 Lonicera japonica HOM05D000118 ORTHO05D000098 2.0e-07 58.5 45 55.6
CsaV3_5G037020 Cucumis sativus L. HOM05D000118 ORTHO05D000098 2.6e-07 58.2 42 61.9
MBI19_g06836_MAGBIO Magnolia biondii HOM05D000118 ORTHO05D000098 2.6e-07 58.2 58 51.7
HPP92_019260 Vanilla planifolia HOM05D000118 ORTHO05D000098 2.6e-07 58.2 43 62.8
ECA234G0828 Erigeron canadensis HOM05D000118 ORTHO05D000098 3.4e-07 57.8 41 65.9
MD16G1019800 Malus domestica HOM05D000118 ORTHO05D000098 3.4e-07 57.8 41 68.3
AUR62004264 Chenopodium quinoa HOM05D000118 ORTHO05D000098 4.4e-07 57.4 54 53.7
AUR62042752 Chenopodium quinoa HOM05D000118 ORTHO05D000098 4.4e-07 57.4 54 53.7
Aqoxy2G03819 Aquilegia oxysepala HOM05D000118 ORTHO05D000098 5.8e-07 57.0 58 48.3
Cc11_g07020 Coffea canephora HOM05D000118 ORTHO05D000098 5.8e-07 57.0 56 50.0
HPP92_019258 Vanilla planifolia HOM05D000118 ORTHO05D000098 5.8e-07 57.0 43 60.5
MELO3C026436.2 Cucumis melo HOM05D000118 ORTHO05D000098 7.6e-07 56.6 42 61.9
CiPaw.04G100200 Carya illinoinensis HOM05D000118 ORTHO05D000098 9.9e-07 56.2 58 50.0
ClCG07G005710 Citrullus lanatus HOM05D000118 ORTHO05D000098 9.9e-07 56.2 56 48.2
EL10Ac1g00915 Beta vulgaris HOM05D000118 ORTHO05D000098 1.3e-06 55.8 54 50.0
MBI19_g03220_MAGBIO Magnolia biondii HOM05D000118 ORTHO05D000098 1.3e-06 55.8 35 71.4
Sed0018732 Sechium edule HOM05D000118 ORTHO05D000098 2.2e-06 55.1 41 61.0
FAN09G2126 Fragaria x ananassa HOM05D000118 ORTHO05D000098 3.7e-06 54.3 43 60.5
MBI19_g03219_MAGBIO Magnolia biondii HOM05D000118 ORTHO05D000098 4.9e-06 53.9 35 68.6
MD07G1178500 Malus domestica HOM05D000118 ORTHO05D035197 8.4e-06 53.1 35 71.4
TWI74G1150 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 8.4e-06 53.1 39 51.3


User provided reference genes

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